Gene detail

Detailed information of OS493_032593-T1 in Lophelia pertusa

Genomic Location: scaffold_245:78814...88681
NR annotation: KAJ7353723.1, Cyclin-dependent kinase 20 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8WIP6	Cyclin-dependent kinase 20 OS=Danio rerio OX=7955 GN=cdk20 PE=2 SV=1
Q9JHU3	Cyclin-dependent kinase 20 OS=Mus musculus OX=10090 GN=Cdk20 PE=1 SV=1
Q4KM34	Cyclin-dependent kinase 20 OS=Rattus norvegicus OX=10116 GN=Cdk20 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004625 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR050108 all species →	Family	Cyclin-dependent kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR048002 all species →	Domain	Cyclin-dependent kinase 20-like, catalytic domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24056 all species →	CELL DIVISION PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08817	CCRK; cell cycle related kinase	EC:2.7.11.22	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032593-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

34.4Max TPM

14.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.07	29.76
polyp at pH7 6	18	18	16.70	27.55
coral polyp · control treatment	16	16	17.49	34.44
coral polyp · oil and dispersant treatment	16	16	12.87	21.03
coral polyp · oil treatment	16	16	17.22	30.47
coral polyp · dispersant treatment	16	16	8.51	16.20
Polyp	10	10	14.13	32.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.42
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.48
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.