Detailed information of OS493_032598-T1 in Lophelia pertusa

Genomic Location: scaffold_245:210306...213248
NR annotation: KAJ7353728.1, hypothetical protein OS493_032598 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P28337Aminomethyltransferase, mitochondrial OS=Gallus gallus OX=9031 GN=AMT PE=1 SV=2
P48728Aminomethyltransferase, mitochondrial OS=Homo sapiens OX=9606 GN=AMT PE=1 SV=1
P25285Aminomethyltransferase, mitochondrial OS=Bos taurus OX=9913 GN=AMT PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004975 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08669
all species →		GCV_T_CGlycine cleavage T-protein C-terminal barrel domainDomainInterproscan
PF01571
all species →		GCV_TAminomethyltransferase folate-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028896
all species →		FamilyAminomethyltransferase-likeInterproscan
IPR013977
all species →		DomainGlycine cleavage T-protein, C-terminal barrel domainInterproscan
IPR029043
all species →		Homologous_superfamilyGlycine cleavage T-protein/YgfZ, C-terminalInterproscan
IPR006222
all species →		DomainAminomethyltransferase, folate-binding domainInterproscan
IPR027266
all species →		Homologous_superfamilyGTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43757
all species →		AMINOMETHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_032598-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_032598-T1 global co-expression network
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