Gene detail

Detailed information of OS493_032742-T1 in Lophelia pertusa

Genomic Location: scaffold_248:65196...69595
NR annotation: KAJ7382784.1, hypothetical protein OS493_032742 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47747	Histamine H2 receptor OS=Cavia porcellus OX=10141 GN=HRH2 PE=3 SV=1
P17124	Histamine H2 receptor OS=Canis lupus familiaris OX=9615 GN=HRH2 PE=1 SV=1
Q76MS7	Histamine H2 receptor OS=Gorilla gorilla gorilla OX=9595 GN=HRH2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000751 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050125 all species →	Family	G-protein coupled receptor opsins	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR005395 all species →	Family	Neuropeptide FF receptor family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24240 all species →	OPSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007602 all species →	Biological Process	phototransduction	Interproscan
GO:0008020 all species →	Molecular Function	G protein-coupled photoreceptor activity	Interproscan
GO:0071482 all species →	Biological Process	cellular response to light stimulus	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0008188 all species →	Molecular Function	neuropeptide receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032742-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032742-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

18.1Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.80	5.15
polyp at pH7 6	18	18	3.10	7.23
coral polyp · control treatment	16	16	3.80	10.05
coral polyp · oil and dispersant treatment	16	16	4.20	9.64
coral polyp · oil treatment	16	16	4.47	10.94
coral polyp · dispersant treatment	16	15	6.15	18.13
Polyp	10	9	2.29	8.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.