Gene detail

Detailed information of OS493_032833-T1 in Lophelia pertusa

Genomic Location: scaffold_250:211512...217871
NR annotation: KAJ7370335.1, hypothetical protein OS493_032833 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L1P9	Multidrug and toxin extrusion protein 1 OS=Danio rerio OX=7955 GN=slc47a1 PE=2 SV=1
Q3V050	Multidrug and toxin extrusion protein 2 OS=Mus musculus OX=10090 GN=Slc47a2 PE=1 SV=1
Q8K0H1	Multidrug and toxin extrusion protein 1 OS=Mus musculus OX=10090 GN=Slc47a1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001247 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01554 all species →	MatE	MatE	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002528 all species →	Family	Multi antimicrobial extrusion protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11206 all species →	MULTIDRUG RESISTANCE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015297 all species →	Molecular Function	antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042910 all species →	Molecular Function	xenobiotic transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032833-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032833-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

18.4Max TPM

4.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	1.15	3.43
polyp at pH7 6	18	11	1.23	4.35
coral polyp · control treatment	16	16	6.62	14.20
coral polyp · oil and dispersant treatment	16	16	7.00	18.35
coral polyp · oil treatment	16	16	6.17	12.36
coral polyp · dispersant treatment	16	15	3.80	7.04
Polyp	10	9	6.72	17.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.