Gene detail

Detailed information of OS493_032837-T1 in Lophelia pertusa

Genomic Location: scaffold_250:339138...340875
NR annotation: KAJ7370339.1, hypothetical protein OS493_032837 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CD54	Piezo-type mechanosensitive ion channel component 2 OS=Mus musculus OX=10090 GN=Piezo2 PE=1 SV=2
Q9H5I5	Piezo-type mechanosensitive ion channel component 2 OS=Homo sapiens OX=9606 GN=PIEZO2 PE=1 SV=2
Q92508	Piezo-type mechanosensitive ion channel component 1 OS=Homo sapiens OX=9606 GN=PIEZO1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002149 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12166 all species →	Piezo_RRas_bdg	Piezo non-specific cation channel, R-Ras-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027272 all species →	Family	Piezo family	Interproscan
IPR031334 all species →	Domain	Piezo non-specific cation channel, R-Ras-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47049 all species →	PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008381 all species →	Molecular Function	mechanosensitive monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032837-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032837-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

89.7Max TPM

44.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	55.44	80.59
polyp at pH7 6	18	18	53.06	80.97
coral polyp · control treatment	16	16	48.52	89.66
coral polyp · oil and dispersant treatment	16	16	41.90	80.08
coral polyp · oil treatment	16	16	50.02	75.81
coral polyp · dispersant treatment	16	16	29.16	37.87
Polyp	10	10	26.14	42.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.11
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.28
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	41.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	39.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	34.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.