Gene detail

Detailed information of OS493_032846-T1 in Lophelia pertusa

Genomic Location: scaffold_250:406528...412822
NR annotation: KAJ7370347.1, Endonuclease/exonuclease/phosphatase domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7L9B9	Endonuclease/exonuclease/phosphatase family domain-containing protein 1 OS=Homo sapiens OX=9606 GN=EEPD1 PE=1 SV=2
Q3MHJ7	Endonuclease/exonuclease/phosphatase family domain-containing protein 1 OS=Bos taurus OX=9913 GN=EEPD1 PE=2 SV=1
Q6IND4	Endonuclease/exonuclease/phosphatase family domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=eepd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF12836 all species →	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004509 all species →	Domain	Competence protein ComEA, helix-hairpin-helix domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR051675 all species →	Family	Endonuclease/exonuclease/phosphatase family domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21180 all species →	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032846-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032846-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.3Max TPM

6.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.81	9.53
polyp at pH7 6	18	18	6.98	9.83
coral polyp · control treatment	16	16	7.02	18.04
coral polyp · oil and dispersant treatment	16	16	4.97	20.27
coral polyp · oil treatment	16	16	6.62	8.85
coral polyp · dispersant treatment	16	16	3.50	7.67
Polyp	10	9	5.52	10.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.77
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.