Gene detail

Detailed information of OS493_032848-T1 in Lophelia pertusa

Genomic Location: scaffold_250:450907...458627
NR annotation: KAJ7370349.1, hypothetical protein OS493_032848 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1E9	Golgi apparatus protein 1 OS=Cricetulus griseus OX=10029 GN=GLG1 PE=1 SV=1
Q62638	Golgi apparatus protein 1 OS=Rattus norvegicus OX=10116 GN=Glg1 PE=1 SV=1
Q61543	Golgi apparatus protein 1 OS=Mus musculus OX=10090 GN=Glg1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00839 all species →	Cys_rich_FGFR	Cysteine rich repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001893 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat	Interproscan
IPR039728 all species →	Family	Golgi apparatus protein 1	Interproscan
IPR017873 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11884 all species →	SELECTIN LIGAND RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032848-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032848-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

41.8Max TPM

15.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.87	19.23
polyp at pH7 6	18	18	11.64	19.03
coral polyp · control treatment	16	16	21.76	40.41
coral polyp · oil and dispersant treatment	16	16	19.90	31.88
coral polyp · oil treatment	16	16	17.36	41.82
coral polyp · dispersant treatment	16	16	20.89	38.76
Polyp	10	9	3.70	6.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.15
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.75
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.