Gene detail

Detailed information of OS493_032849-T1 in Lophelia pertusa

Genomic Location: scaffold_250:459552...466198
NR annotation: KAJ7370350.1, hypothetical protein OS493_032849 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1E9	Golgi apparatus protein 1 OS=Cricetulus griseus OX=10029 GN=GLG1 PE=1 SV=1
Q62638	Golgi apparatus protein 1 OS=Rattus norvegicus OX=10116 GN=Glg1 PE=1 SV=1
Q61543	Golgi apparatus protein 1 OS=Mus musculus OX=10090 GN=Glg1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00839 all species →	Cys_rich_FGFR	Cysteine rich repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017873 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat, eukaryote	Interproscan
IPR039728 all species →	Family	Golgi apparatus protein 1	Interproscan
IPR001893 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11884 all species →	SELECTIN LIGAND RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032849-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032849-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

61.1Max TPM

20.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.96	22.28
polyp at pH7 6	18	18	14.12	26.03
coral polyp · control treatment	16	16	29.99	61.06
coral polyp · oil and dispersant treatment	16	16	25.37	37.67
coral polyp · oil treatment	16	16	24.89	42.31
coral polyp · dispersant treatment	16	16	22.77	48.28
Polyp	10	9	5.24	8.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.96
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.19
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.