Gene detail

Detailed information of OS493_032850-T1 in Lophelia pertusa

Genomic Location: scaffold_250:468465...475000
NR annotation: KAJ7370351.1, glycogenin glucosyltransferase glg1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q02391	Golgi apparatus protein 1 OS=Gallus gallus OX=9031 GN=GLG1 PE=1 SV=1
Q92896	Golgi apparatus protein 1 OS=Homo sapiens OX=9606 GN=GLG1 PE=1 SV=2
Q61543	Golgi apparatus protein 1 OS=Mus musculus OX=10090 GN=Glg1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00839 all species →	Cys_rich_FGFR	Cysteine rich repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001893 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat	Interproscan
IPR039728 all species →	Family	Golgi apparatus protein 1	Interproscan
IPR017873 all species →	Repeat	Cysteine-rich Golgi apparatus protein 1 repeat, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11884 all species →	SELECTIN LIGAND RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0017134 all species →	Molecular Function	fibroblast growth factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_032850-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032850-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

65.7Max TPM

32.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.00	38.01
polyp at pH7 6	18	18	27.40	39.94
coral polyp · control treatment	16	16	44.03	65.65
coral polyp · oil and dispersant treatment	16	16	36.42	51.35
coral polyp · oil treatment	16	16	37.91	56.05
coral polyp · dispersant treatment	16	16	31.91	64.61
Polyp	10	10	18.14	35.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.88
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.95
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	35.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.