Detailed information of OS493_032855-T1 in Lophelia pertusa

Genomic Location: scaffold_250:553758...562724
NR annotation: KAJ7370356.1, Ubiquitin carboxyl-terminal hydrolase 15, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6QR55Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus OX=9913 GN=USP4 PE=2 SV=1
P35123Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus OX=10090 GN=Usp4 PE=1 SV=3
Q13107Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000960 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06337
all species →		DUSPDUSP domainDomainInterproscan
PF14836
all species →		Ubiquitin_3Ubiquitin-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006615
all species →		DomainPeptidase C19, ubiquitin-specific peptidase, DUSP domainInterproscan
IPR028135
all species →		DomainUbiquitin-like domain, USP-typeInterproscan
IPR035927
all species →		Homologous_superfamilyDUSP-like superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for OS493_032855-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_032855-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_032855-T1 global co-expression network
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