Gene detail

Detailed information of OS493_032965-T1 in Lophelia pertusa

Genomic Location: scaffold_252:365264...375384
NR annotation: KAJ7322780.1, hypothetical protein OS493_032965 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8AVL0	CWF19-like protein 1 OS=Xenopus laevis OX=8355 GN=cwf19l1 PE=2 SV=1
Q5R8R4	CWF19-like protein 1 OS=Pongo abelii OX=9601 GN=CWF19L1 PE=2 SV=1
Q69YN2	CWF19-like protein 1 OS=Homo sapiens OX=9606 GN=CWF19L1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003055 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04676 all species →	CwfJ_C_2	Protein similar to CwfJ C-terminus 2	Family	Interproscan
PF04677 all species →	CwfJ_C_1	Protein similar to CwfJ C-terminus 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR006767 all species →	Domain	Cwf19-like protein, C-terminal domain-2	Interproscan
IPR006768 all species →	Domain	Cwf19-like, C-terminal domain-1	Interproscan
IPR040194 all species →	Family	Cwf19-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12072 all species →	CWF19, CELL CYCLE CONTROL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0061632 all species →	Molecular Function	RNA lariat debranching enzyme activator activity	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24939	CWF19L1, DRN1; CWF19-like protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_032965-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

46.6Max TPM

16.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.75	35.85
polyp at pH7 6	18	18	25.73	46.63
coral polyp · control treatment	16	16	14.47	31.76
coral polyp · oil and dispersant treatment	16	16	9.30	20.07
coral polyp · oil treatment	16	16	14.43	21.40
coral polyp · dispersant treatment	16	16	10.14	18.61
Polyp	10	10	18.01	26.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.13
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.62
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.15
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.60
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.