Detailed information of OS493_032969-T1 in Lophelia pertusa

Genomic Location: scaffold_252:434252...436864
NR annotation: KAJ7322784.1, hypothetical protein OS493_032969 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q07YI6Uracil-DNA glycosylase OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=ung PE=3 SV=1
A9IGW1Uracil-DNA glycosylase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=ung PE=3 SV=1
Q2L0Y2Uracil-DNA glycosylase OS=Bordetella avium (strain 197N) OX=360910 GN=ung PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001192 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_032969-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR002043
all species →		FamilyUracil-DNA glycosylase family 1Interproscan
IPR036895
all species →		Homologous_superfamilyUracil-DNA glycosylase-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11264
all species →		URACIL-DNA GLYCOSYLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004844
all species →		Molecular Functionuracil DNA N-glycosylase activityInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006284
all species →		Biological Processbase-excision repairInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0097510
all species →		Biological Processbase-excision repair, AP site formation via deaminated base removalInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_032969-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_032969-T1 global co-expression network
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