Gene detail

Detailed information of OS493_033020-T1 in Lophelia pertusa

Genomic Location: scaffold_254:37950...64541
NR annotation: KAJ7382735.1, hypothetical protein OS493_033020 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_033020-T1

ATGAACACCGAAACGAACGAAGCGAGAGAAGCCGATCGTGAGACCGATAGAACTGATGATACGAAAAGACCAGAAAGAAGAATTGAACAGGCACATTATTTGTGGGACACGATTGTGAATTCAGGTGTTGAACCAGATGTAATGCTGTACAATGGTCTGTTGAATGTGTACCTTCAAAACAATCACGACTTTAATCCTCTCGAGGTTCTGGAACAAATGGAGAATAACAAAGTTGAACCTAACACGACAACATTGTTACTGTTGATTGAGGGATATGCTCAGAAAGGAGATGTCGCAGGAGCATTTAAAGTTCTGGAGTTCATAAAAGCTGCCCAGATGCCACTTACTGAGCAAGTGTTTGCGTCTCTTGTCACGGCATATGGCTTAAGTGGGGATCTTGAGAGTGCCAGGGGTGTGTTCGACCTCATGAGGGAAAGTGGTTTGGAGCCAGACATATACAGTTACACAGCACTGTTATGTGCTTATGGTGTAACGGGAGACATGGAAGCTATAATGAAGATAATTGATGAGATTGCAAGCAAAGCCTCCTTCAAAAACCCATTATTAAAGAGTCTTTTAGAAGGAAATTTGAGAGAGCTAATGTTGACAGTTGCCAATCGTGGTGAGATTGTCACTGCACTCATCTTGGCGGCGCACATGTCAGAAGCAGTCGCATCTCAGAATGATCCTATCAGGCAAGAGATCGCCTTGATTAAGCACGTCATCGTTTCTGGGCAGTCACTTGATATTATAATGGTCACTATCCAAGAGCTGCAGAAGACATTGGGTGCTGTTACAAATGTGTACGAATTTGCTTTAAATGAAAGCTATGGCACTAAAAACCCAGAACTCTGTTTTGTCATTTTAAAAGAGATGCTTAAAAAGAACTTAAGAGTGCGGGATCACTACTTTTACCCTCTCATGGCCATGTATGCCAACAAAAGAAATTCAAACGGTGCACAAGATGTAGTGAACTTGATGGGAGAGTATGGCTTCGAACCAGATGGCTTGGTTTTGAGGTTCTTGATGAAGTCTTATGGAGAAACAGCAGACGCAAATCATGTGGAGTCTTTTATGAATTTATCCAAGGGTTTGCCTAGCTCTAGGATAGTTCTGAAGTCTTTAGCGCAGCTGGTTATGTCAACTGGACAATTGGAAAAGTTGGAAACAACTATTGAATATGCTACGAACGAAGGCACGAATCTCCTTTGCATGGGAGATGCTTTTGAAGATTATCTTAATCAAAGAAATTTTGACCCTCACAATGGAGTAGAGATTCTCAAGGTCCTTCAAAAACATAATTGTGTTCAACATATGGGTTCCAAAATTTGGATGAAATTTAAAAGCAGTGACCAAGACAAAGCCAAGGACAATGCAAAATTTGTTGAACTCCTTTTGAAAGAAGGTCTAGACAAAATACTGGATTCACGAGCATATACATCTGTGTTGCAACGGTTTCAGTCATTGAAAATGTCAAATGAATTTTATGATTTTGTACAGACGATGAAGAAATACCAAATAAATTTGGATGAATATCACTATAAACAACTTCTCATGATGTTGGGCTATGATGGAAAGGCAGAAGCAGCACAGTTTTGTTTTGAAAAGCGTGAGCAATTAATAGAGCCTACAAAGATTGAATACAGTGCTCTGATGCAAGCATATGCCAATTGTCCAGAAGGAGGAATAACTGCTCCCATAAAACAGGACCGGAACATGAGGCGAATTTGTCAATTGTTCAATACAATGTCGTCAAAAGGATTTGAGCTTACAAAGCGGGCTGCAGGTGCTGCCTGCATAGCTCATCTGGCCACAGGTCAATACGATAAAGCAGAGGAAATTAGACTTATACATGGTGCTGGAGAACCTCAATTCAAAGTGTTGTATGAATTTATGAGATATTATTCAAAACATGGCGATGTGAGAAAAACACTGGAAGTGATGGAGGACATGAACAAAATAAGAAAAACACCAGCCTTCCCTGCGTTTGTTTACAACAATTTGTTACATGCATATGGTTTTCATGGTGACACTGAATCTCAGTGGAAGGTGTTTGACGAAATGAAACAAAACAATGTGGAGCCCAATAGTCGTACTTACTCAAAGTTGATGCAGGGTTACTTAAACCCAGTGGAGTGA

Transcript

OS493_033020-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004431 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan
PF17177 all species →	PPR_long	Pentacotripeptide-repeat region of PRORP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR033490 all species →	Family	Leucine-rich PPR motif-containing protein	Interproscan
IPR033443 all species →	Domain	Pentacotripeptide-repeat region of PRORP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46669 all species →	LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0070129 all species →	Biological Process	regulation of mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033020-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_033020-T1 global co-expression network