Gene detail

Detailed information of OS493_033059-T1 in Lophelia pertusa

Genomic Location: scaffold_254:503977...509813
NR annotation: KAJ7382773.1, Peroxiredoxin-5, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BGI1	Peroxiredoxin-5, mitochondrial OS=Bos taurus OX=9913 GN=PRDX5 PE=2 SV=2
P30044	Peroxiredoxin-5, mitochondrial OS=Homo sapiens OX=9606 GN=PRDX5 PE=1 SV=4
Q9GLW7	Peroxiredoxin-5, mitochondrial OS=Chlorocebus aethiops OX=9534 GN=PRDX5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008099 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08534 all species →	Redoxin	Redoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR013740 all species →	Domain	Redoxin	Interproscan
IPR037944 all species →	Family	Peroxiredoxin-5-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10430 all species →	PEROXIREDOXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008379 all species →	Molecular Function	thioredoxin peroxidase activity	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11187	PRDX5; peroxiredoxin 5	EC:1.11.1.24	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033059-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

4,713.9Max TPM

876.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	504.14	904.75
polyp at pH7 6	18	18	622.00	1,135.93
coral polyp · control treatment	16	16	819.28	1,664.14
coral polyp · oil and dispersant treatment	16	16	1,233.84	2,230.81
coral polyp · oil treatment	16	16	833.33	1,397.79
coral polyp · dispersant treatment	16	16	657.85	1,801.78
Polyp	10	10	1,939.96	4,713.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	904.75
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	883.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	806.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	788.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	639.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	627.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	587.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	587.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	538.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	497.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	401.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	399.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	342.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	334.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	200.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	199.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	169.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	165.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,135.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,122.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	922.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	899.65
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	816.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	813.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	714.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	705.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	674.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	668.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	578.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	576.12
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	309.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	298.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	250.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	239.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	236.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	231.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,664.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,203.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,002.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	945.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	940.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	893.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	879.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	800.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	778.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	742.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	667.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	606.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	596.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	586.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	491.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	308.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,230.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,948.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,787.96
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,567.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,512.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,425.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,240.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,074.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,012.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	964.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	946.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	942.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	904.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	852.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	841.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	489.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,397.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,116.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,113.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,063.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	991.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	917.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	881.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	816.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	789.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	729.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	721.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	642.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	575.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	566.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	533.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	476.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,801.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,153.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,074.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	728.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	648.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	638.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	579.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	550.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	485.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	460.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	448.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	441.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	439.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	435.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	360.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	277.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4,713.89
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3,839.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2,615.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2,450.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1,876.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1,283.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,112.95
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	647.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	518.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	342.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.