Gene detail

Detailed information of OS493_033180-T1 in Lophelia pertusa

Genomic Location: scaffold_257:525507...540032
NR annotation: KAJ7352913.1, Target of rapamycin complex 2 subunit mapkap1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BKH7	Target of rapamycin complex 2 subunit MAPKAP1 OS=Mus musculus OX=10090 GN=Mapkap1 PE=1 SV=1
A4IIM3	Target of rapamycin complex 2 subunit MAPKAP1 OS=Xenopus tropicalis OX=8364 GN=mapkap1 PE=2 SV=1
A2VDU2	Target of rapamycin complex 2 subunit MAPKAP1 OS=Bos taurus OX=9913 GN=MAPKAP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004519 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16978 all species →	CRIM	SAPK-interacting protein 1 (Sin1), middle CRIM domain	Family	Interproscan
PF16979 all species →	SIN1_PH	SAPK-interacting protein 1 (Sin1), Pleckstrin-homology	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031567 all species →	Domain	Sin1, middle CRIM domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR031313 all species →	Domain	SAPK-interacting protein 1, Pleckstrin-homology domain	Interproscan
IPR008828 all species →	Family	TORC2 component Sin1/Avo1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13335 all species →	TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0031932 all species →	Cellular Component	TORC2 complex	Interproscan
GO:0038203 all species →	Biological Process	TORC2 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20410	MAPKAP1, SIN1, AVO1; target of rapamycin complex 2 subunit MAPKAP1/AVO1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033180-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

97.9Max TPM

30.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.32	39.83
polyp at pH7 6	18	18	33.42	50.57
coral polyp · control treatment	16	16	29.13	43.92
coral polyp · oil and dispersant treatment	16	16	22.60	37.48
coral polyp · oil treatment	16	16	29.53	35.76
coral polyp · dispersant treatment	16	16	18.14	30.22
Polyp	10	10	54.34	97.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.22
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.22
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	97.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	96.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	60.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	59.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	56.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	45.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	34.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	30.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.37

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.