Gene detail

Detailed information of OS493_033323-T1 in Lophelia pertusa

Genomic Location: scaffold_261:292092...293665
NR annotation: KAJ7376700.1, hypothetical protein OS493_033323 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K4Q7	Ceramide kinase OS=Mus musculus OX=10090 GN=Cerk PE=1 SV=2
Q8TCT0	Ceramide kinase OS=Homo sapiens OX=9606 GN=CERK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001777 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19280 all species →	CERK_C	Ceramide kinase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045363 all species →	Domain	Ceramide kinase, C-terminal domain	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_033323-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_033323-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033323-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033323-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

184.5Max TPM

54.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.50	106.51
polyp at pH7 6	18	18	46.96	95.22
coral polyp · control treatment	16	16	87.02	184.46
coral polyp · oil and dispersant treatment	16	16	70.94	134.62
coral polyp · oil treatment	16	16	62.48	94.97
coral polyp · dispersant treatment	16	16	38.51	71.03
Polyp	10	10	15.82	41.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	184.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.90
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.13
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.