Gene detail

Detailed information of OS493_033357-T1 in Lophelia pertusa

Genomic Location: scaffold_262:163267...166463
NR annotation: KAJ7370277.1, hypothetical protein OS493_033357 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q71VM4	Importin subunit alpha-1a OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0253300 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007632 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16356 all species →	TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15043	KPNA2_7; importin subunit alpha-1/8	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033357-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

15.8Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.59	5.42
polyp at pH7 6	18	17	3.97	7.31
coral polyp · control treatment	16	16	5.57	15.43
coral polyp · oil and dispersant treatment	16	16	3.71	15.84
coral polyp · oil treatment	16	16	4.94	9.72
coral polyp · dispersant treatment	16	16	2.50	7.89
Polyp	10	9	3.49	9.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.