Detailed information of OS493_033449-T1 in Lophelia pertusa

Genomic Location: scaffold_265:354161...365532
NR annotation: KAJ7389127.1, Thioredoxin domain-containing protein 17 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008210 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06110
all species →		TXD17-like_TrxThioredoxin domain-containing protein 17-like, thioredoxin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045108
all species →		FamilyThioredoxin domain-containing protein 17-likeInterproscan
IPR036249
all species →		Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR010357
all species →		DomainThioredoxin domain-containing protein 17-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12452
all species →		42-9-9 PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0047134
all species →		Molecular Functionprotein-disulfide reductase (NAD(P)H) activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_033449-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033449-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
110TPM > 0
7Conditions
85.9Max TPM
44.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 45.90 69.36
polyp at pH7 6 18 18 40.83 53.63
coral polyp · control treatment 16 16 53.49 85.89
coral polyp · oil and dispersant treatment 16 16 41.57 70.13
coral polyp · oil treatment 16 16 49.48 80.65
coral polyp · dispersant treatment 16 16 37.82 71.06
Polyp 10 10 41.64 57.48

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11359495 polyp at pH7 9 not recorded not recorded not recorded - 69.36
SRR11359494 polyp at pH7 9 not recorded not recorded not recorded - 67.33
SRR11359523 polyp at pH7 9 not recorded not recorded not recorded - 51.23
SRR11359508 polyp at pH7 9 not recorded not recorded not recorded - 49.20
SRR11359522 polyp at pH7 9 not recorded not recorded not recorded - 48.35
SRR11359506 polyp at pH7 9 not recorded not recorded not recorded - 48.18
SRR11359496 polyp at pH7 9 not recorded not recorded not recorded - 47.63
SRR11359497 polyp at pH7 9 not recorded not recorded not recorded - 46.93
SRR11359509 polyp at pH7 9 not recorded not recorded not recorded - 45.51
SRR11359511 polyp at pH7 9 not recorded not recorded not recorded - 43.32
SRR11359510 polyp at pH7 9 not recorded not recorded not recorded - 42.04
SRR11359499 polyp at pH7 9 not recorded not recorded not recorded - 41.99
SRR11359507 polyp at pH7 9 not recorded not recorded not recorded - 40.74
SRR11359521 polyp at pH7 9 not recorded not recorded not recorded - 38.44
SRR11359518 polyp at pH7 9 not recorded not recorded not recorded - 38.31
SRR11359520 polyp at pH7 9 not recorded not recorded not recorded - 38.29
SRR11359498 polyp at pH7 9 not recorded not recorded not recorded - 36.54
SRR11359519 polyp at pH7 9 not recorded not recorded not recorded - 32.74
SRR11359527 polyp at pH7 6 not recorded not recorded not recorded - 53.63
SRR11359503 polyp at pH7 6 not recorded not recorded not recorded - 52.83
SRR11359514 polyp at pH7 6 not recorded not recorded not recorded - 52.37
SRR11359502 polyp at pH7 6 not recorded not recorded not recorded - 50.98
SRR11359500 polyp at pH7 6 not recorded not recorded not recorded - 50.14
SRR11359512 polyp at pH7 6 not recorded not recorded not recorded - 48.98
SRR11359501 polyp at pH7 6 not recorded not recorded not recorded - 47.70
SRR11359526 polyp at pH7 6 not recorded not recorded not recorded - 46.12
SRR11359515 polyp at pH7 6 not recorded not recorded not recorded - 46.04
SRR11359513 polyp at pH7 6 not recorded not recorded not recorded - 43.83
SRR11359504 polyp at pH7 6 not recorded not recorded not recorded - 38.12
SRR11359505 polyp at pH7 6 not recorded not recorded not recorded - 36.83
SRR11359525 polyp at pH7 6 not recorded not recorded not recorded - 34.37
SRR11359528 polyp at pH7 6 not recorded not recorded not recorded - 34.19
SRR11359529 polyp at pH7 6 not recorded not recorded not recorded - 32.78
SRR11359517 polyp at pH7 6 not recorded not recorded not recorded - 24.88
SRR11359516 polyp at pH7 6 not recorded not recorded not recorded - 21.68
SRR11359524 polyp at pH7 6 not recorded not recorded not recorded - 19.50
SRR16705975 coral polyp · control treatment coral polyp polyp control treatment SRP344271 85.89
SRR16705942 coral polyp · control treatment coral polyp polyp control treatment SRP344271 80.59
SRR16705974 coral polyp · control treatment coral polyp polyp control treatment SRP344271 72.55
SRR16705943 coral polyp · control treatment coral polyp polyp control treatment SRP344271 69.18
SRR16705972 coral polyp · control treatment coral polyp polyp control treatment SRP344271 66.34
SRR16705973 coral polyp · control treatment coral polyp polyp control treatment SRP344271 59.32
SRR16705960 coral polyp · control treatment coral polyp polyp control treatment SRP344271 57.23
SRR16705965 coral polyp · control treatment coral polyp polyp control treatment SRP344271 56.74
SRR16705971 coral polyp · control treatment coral polyp polyp control treatment SRP344271 54.79
SRR16705970 coral polyp · control treatment coral polyp polyp control treatment SRP344271 49.77
SRR16705989 coral polyp · control treatment coral polyp polyp control treatment SRP344271 37.71
SRR16705957 coral polyp · control treatment coral polyp polyp control treatment SRP344271 37.40
SRR16705991 coral polyp · control treatment coral polyp polyp control treatment SRP344271 36.89
SRR16705946 coral polyp · control treatment coral polyp polyp control treatment SRP344271 34.08
SRR16705990 coral polyp · control treatment coral polyp polyp control treatment SRP344271 32.50
SRR16705992 coral polyp · control treatment coral polyp polyp control treatment SRP344271 24.92
SRR16705979 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 70.13
SRR16705948 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 66.24
SRR16705997 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 65.77
SRR16705977 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 54.27
SRR16705976 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 52.44
SRR16705982 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 49.00
SRR16705993 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 44.41
SRR16705978 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 42.70
SRR16706004 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 35.97
SRR16705944 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 34.14
SRR16705945 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 31.14
SRR16705995 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 27.89
SRR16705947 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 26.74
SRR16705996 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 24.47
SRR16706005 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 22.10
SRR16705994 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 17.70
SRR16705952 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 80.65
SRR16705951 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 69.28
SRR16705950 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 63.75
SRR16706001 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 61.13
SRR16705983 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 56.39
SRR16705963 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 52.19
SRR16706000 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 51.23
SRR16705949 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 49.79
SRR16705998 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 48.71
SRR16705999 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 48.20
SRR16705984 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 46.43
SRR16705961 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 43.64
SRR16705981 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 40.22
SRR16705964 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 37.19
SRR16705962 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 26.51
SRR16705980 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 16.44
SRR16705956 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 71.06
SRR16705988 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 60.56
SRR16705969 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 58.40
SRR16705959 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 49.38
SRR16705954 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 47.80
SRR16705967 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 38.86
SRR16705958 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 36.74
SRR16705966 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 35.69
SRR16705955 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 35.56
SRR16706003 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 35.50
SRR16705986 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 32.96
SRR16705968 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 31.19
SRR16706002 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 28.72
SRR16705987 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 24.04
SRR16705985 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 12.81
SRR16705953 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 5.84
SRR23025708 Polyp not recorded not recorded not recorded - 57.48
SRR23025713 Polyp not recorded not recorded not recorded - 52.87
SRR7746666 Polyp not recorded not recorded not recorded - 50.45
SRR23025710 Polyp not recorded not recorded not recorded - 46.53
SRR23025711 Polyp not recorded not recorded not recorded - 44.09
SRR7746667 Polyp not recorded not recorded not recorded - 40.71
SRR7746669 Polyp not recorded not recorded not recorded - 33.71
SRR23025709 Polyp not recorded not recorded not recorded - 32.31
SRR7746668 Polyp not recorded not recorded not recorded - 30.01
SRR23025712 Polyp not recorded not recorded not recorded - 28.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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