Gene detail

Detailed information of OS493_033466-T1 in Lophelia pertusa

Genomic Location: scaffold_265:501181...506239
NR annotation: KAJ7389140.1, hypothetical protein OS493_033466 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53445	Fructose-bisphosphate aldolase, muscle type OS=Lethenteron camtschaticum OX=980415 PE=2 SV=1
P53448	Fructose-bisphosphate aldolase C OS=Carassius auratus OX=7957 GN=aldoc PE=2 SV=2
Q9GP32	Fructose-bisphosphate aldolase OS=Echinococcus multilocularis OX=6211 GN=FBPA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006680 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00274 all species →	Glycolytic	Fructose-bisphosphate aldolase class-I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000741 all species →	Family	Fructose-bisphosphate aldolase, class-I	Interproscan
IPR029768 all species →	Conserved_site	Fructose-bisphosphate aldolase class-I active site	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11627 all species →	FRUCTOSE-BISPHOSPHATE ALDOLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004332 all species →	Molecular Function	fructose-bisphosphate aldolase activity	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030388 all species →	Biological Process	fructose 1,6-bisphosphate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01623	ALDO; fructose-bisphosphate aldolase, class I	EC:4.1.2.13	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033466-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,194.6Max TPM

732.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	779.59	982.79
polyp at pH7 6	18	18	732.52	920.82
coral polyp · control treatment	16	16	744.31	997.76
coral polyp · oil and dispersant treatment	16	16	688.07	1,194.56
coral polyp · oil treatment	16	16	812.70	1,172.63
coral polyp · dispersant treatment	16	16	652.67	994.65
Polyp	10	10	701.92	1,178.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	982.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	957.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	945.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	925.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	905.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	904.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	890.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	859.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	824.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	821.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	768.68
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	763.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	689.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	666.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	568.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	565.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	504.02
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	488.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	920.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	917.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	911.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	903.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	764.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	748.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	746.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	733.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	732.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	724.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	724.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	722.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	720.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	720.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	719.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	683.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	402.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	387.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	997.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	968.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	954.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	866.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	853.74
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	807.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	791.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	762.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	745.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	703.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	698.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	639.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	634.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	522.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	521.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	439.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,194.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,092.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	869.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	839.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	816.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	796.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	796.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	654.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	579.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	558.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	552.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	529.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	472.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	441.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	439.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	375.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,172.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,097.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,009.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	988.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	939.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	903.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	794.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	792.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	786.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	764.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	754.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	729.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	688.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	602.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	522.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	456.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	994.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	905.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	781.20
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	760.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	719.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	686.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	640.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	628.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	623.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	617.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	591.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	581.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	577.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	526.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	408.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	397.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1,178.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1,046.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	871.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	776.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	669.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	607.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	599.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	562.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	354.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	351.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.