Detailed information of OS493_033512-T1 in Lophelia pertusa

Genomic Location: scaffold_267:158657...162824
NR annotation: KAJ7376632.1, ss18, nBAF chromatin remodeling complex subunit [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q08E31Calcium-responsive transactivator OS=Bos taurus OX=9913 GN=SS18L1 PE=2 SV=1
Q91XJ0Calcium-responsive transcription coactivator OS=Rattus norvegicus OX=10116 GN=Ss18l1 PE=1 SV=1
Q8BW22Calcium-responsive transactivator OS=Mus musculus OX=10090 GN=Ss18l1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007881 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05030
all species →		SSXTSSXT protein (N-terminal region)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007726
all species →		DomainSS18, N-terminalInterproscan

 PANTHER
No PANTHER signature was detected for OS493_033512-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for OS493_033512-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_033512-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_033512-T1 global co-expression network
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