Gene detail

Detailed information of OS493_033532-T1 in Lophelia pertusa

Genomic Location: scaffold_267:322722...342884
NR annotation: KAJ7376650.1, hypothetical protein OS493_033532 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CHJ0	GPI-anchor transamidase component PIGU OS=Cricetulus griseus OX=10029 GN=PIGU PE=1 SV=3
Q9H490	GPI-anchor transamidase component PIGU OS=Homo sapiens OX=9606 GN=PIGU PE=1 SV=3
Q8K358	GPI-anchor transamidase component PIGU OS=Mus musculus OX=10090 GN=Pigu PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005450 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06728 all species →	PIG-U	GPI transamidase subunit PIG-U	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009600 all species →	Family	GPI transamidase subunit PIG-U	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13121 all species →	GPI TRANSAMIDASE COMPONENT PIG-U	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016255 all species →	Biological Process	attachment of GPI anchor to protein	Interproscan
GO:0042765 all species →	Cellular Component	GPI-anchor transamidase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05293	PIGU; GPI-anchor transamidase subunit U	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033532-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

157.5Max TPM

24.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.15	56.00
polyp at pH7 6	18	18	54.24	157.50
coral polyp · control treatment	16	16	14.09	30.93
coral polyp · oil and dispersant treatment	16	16	12.89	40.68
coral polyp · oil treatment	16	16	21.45	88.45
coral polyp · dispersant treatment	16	16	13.51	66.19
Polyp	10	10	10.82	14.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.86
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	148.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	129.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	129.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.04
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.45
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.16
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.61
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.39
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.