Gene detail

Detailed information of OS493_033534-T1 in Lophelia pertusa

Genomic Location: scaffold_267:346546...347397
NR annotation: KAJ7376652.1, hypothetical protein OS493_033534 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LU86	CBY1-interacting BAR domain-containing protein 1 OS=Danio rerio OX=7955 GN=cibar1 PE=2 SV=1
Q8BP22	CBY1-interacting BAR domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cibar1 PE=1 SV=2
A1XBS5	CBY1-interacting BAR domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CIBAR1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001896 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06730 all species →	FAM92	FAM92 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR009602 all species →	Family	CBY1-interacting BAR domain-containing protein/FAM92	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21223 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23868	FAM92; protein FAM92	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033534-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

10.3Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.53	5.93
polyp at pH7 6	18	18	4.20	6.18
coral polyp · control treatment	16	16	3.67	6.56
coral polyp · oil and dispersant treatment	16	15	2.15	4.20
coral polyp · oil treatment	16	16	3.80	6.28
coral polyp · dispersant treatment	16	16	0.98	1.96
Polyp	10	10	6.67	10.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.63
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.18
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.94

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.