Gene detail

Detailed information of OS493_033545-T1 in Lophelia pertusa

Genomic Location: scaffold_267:422863...426831
NR annotation: KAJ7376663.1, hypothetical protein OS493_033545 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PGV1	V-type proton ATPase subunit d 1 OS=Danio rerio OX=7955 GN=atp6v0d1 PE=1 SV=1
P61420	V-type proton ATPase subunit d 1 OS=Bos taurus OX=9913 GN=ATP6V0D1 PE=1 SV=1
P61421	V-type proton ATPase subunit d 1 OS=Homo sapiens OX=9606 GN=ATP6V0D1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007187 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01992 all species →	vATP-synt_AC39	ATP synthase (C/AC39) subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002843 all species →	Family	ATPase, V0 complex, c/d subunit	Interproscan
IPR036079 all species →	Homologous_superfamily	V-type ATP synthase subunit c/d subunit superfamily	Interproscan
IPR016727 all species →	Family	ATPase, V0 complex, subunit d	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11028 all species →	VACUOLAR ATP SYNTHASE SUBUNIT AC39	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0007035 all species →	Biological Process	vacuolar acidification	Interproscan
GO:0016471 all species →	Cellular Component	vacuolar proton-transporting V-type ATPase complex	Interproscan
GO:0033179 all species →	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0033181 all species →	Cellular Component	plasma membrane proton-transporting V-type ATPase complex	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02146	ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d	-	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033545-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

63.4Max TPM

36.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.41	60.75
polyp at pH7 6	18	18	36.52	45.75
coral polyp · control treatment	16	16	43.45	57.41
coral polyp · oil and dispersant treatment	16	16	43.08	63.39
coral polyp · oil treatment	16	16	36.49	53.55
coral polyp · dispersant treatment	16	16	29.47	44.71
Polyp	10	10	26.40	49.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.75
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.23
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.41
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.53
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	49.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.33

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.