Gene detail

Detailed information of OS493_033555-T1 in Lophelia pertusa

Genomic Location: scaffold_267:503518...507705
NR annotation: KAJ7376673.1, 2,4-dienoyl-CoA reductase, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16698	2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial OS=Homo sapiens OX=9606 GN=DECR1 PE=1 SV=1
Q64591	2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial OS=Rattus norvegicus OX=10116 GN=Decr1 PE=1 SV=2
Q9CQ62	2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial OS=Mus musculus OX=10090 GN=Decr1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006303 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43658 all species →	SHORT-CHAIN DEHYDROGENASE/REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0008670 all species →	Molecular Function	2,4-dienoyl-CoA reductase (NADPH) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033555-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033555-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

101.0Max TPM

16.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.04	29.17
polyp at pH7 6	18	18	18.59	22.25
coral polyp · control treatment	16	16	21.22	101.01
coral polyp · oil and dispersant treatment	16	16	14.34	69.51
coral polyp · oil treatment	16	16	15.10	22.08
coral polyp · dispersant treatment	16	16	10.71	18.89
Polyp	10	9	13.18	23.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.08
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.17
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.14
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.