Gene detail

Detailed information of OS493_033592-T1 in Lophelia pertusa

Genomic Location: scaffold_268:303021...309574
NR annotation: KAJ7370246.1, hypothetical protein OS493_033592 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NRN7	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Homo sapiens OX=9606 GN=AASDHPPT PE=1 SV=2
Q9CQF6	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Mus musculus OX=10090 GN=Aasdhppt PE=1 SV=1
Q5NVE1	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Pongo abelii OX=9601 GN=AASDHPPT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006611 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01648 all species →	ACPS	4'-phosphopantetheinyl transferase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037143 all species →	Homologous_superfamily	4'-phosphopantetheinyl transferase domain superfamily	Interproscan
IPR050559 all species →	Family	Phosphopantetheinyl Transferase Superfamily	Interproscan
IPR008278 all species →	Domain	4'-phosphopantetheinyl transferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12215 all species →	PHOSPHOPANTETHEINE TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0008897 all species →	Molecular Function	holo-[acyl-carrier-protein] synthase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019878 all species →	Biological Process	lysine biosynthetic process via aminoadipic acid	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06133	LYS5, acpT; 4'-phosphopantetheinyl transferase	EC:2.7.8.-	Pantothenate and CoA biosynthesis	ko00770	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033592-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

19.5Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.17	19.36
polyp at pH7 6	18	18	11.40	19.48
coral polyp · control treatment	16	16	7.89	14.31
coral polyp · oil and dispersant treatment	16	15	4.46	9.90
coral polyp · oil treatment	16	16	8.77	14.67
coral polyp · dispersant treatment	16	16	4.41	10.32
Polyp	10	10	8.11	13.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.