Gene detail

Detailed information of OS493_033603-T1 in Lophelia pertusa

Genomic Location: scaffold_268:384507...385256
NR annotation: KAJ7370257.1, hypothetical protein OS493_033603 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007800 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_033603-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR043460 all species →	Family	MEDAG/TEX26	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33769 all species →	TESTIS-EXPRESSED PROTEIN 26 ISOFORM X3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033603-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033603-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

35.3Max TPM

6.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	2.80	6.72
polyp at pH7 6	18	12	2.28	10.27
coral polyp · control treatment	16	16	11.27	35.28
coral polyp · oil and dispersant treatment	16	16	9.16	23.42
coral polyp · oil treatment	16	16	9.47	17.56
coral polyp · dispersant treatment	16	16	7.45	13.34
Polyp	10	8	3.49	9.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.27
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.43
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.