Gene detail

Detailed information of OS493_033614-T1 in Lophelia pertusa

Genomic Location: scaffold_268:522582...525794
NR annotation: KAJ7370268.1, hypothetical protein OS493_033614 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009184 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_033614-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_033614-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR37919 all species →	PROTEIN CBG05606	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_033614-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033614-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033614-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

45.2Max TPM

16.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.16	33.58
polyp at pH7 6	18	18	15.44	22.58
coral polyp · control treatment	16	16	19.95	37.60
coral polyp · oil and dispersant treatment	16	16	13.94	26.57
coral polyp · oil treatment	16	16	19.34	36.51
coral polyp · dispersant treatment	16	16	12.36	26.98
Polyp	10	10	19.14	45.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.22
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	45.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	28.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.22

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.