Gene detail

Detailed information of OS493_033657-T1 in Lophelia pertusa

Genomic Location: scaffold_270:306055...313100
NR annotation: KAJ7321804.1, Proteasome inhibitor PI31 subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RDN3	Proteasome inhibitor PI31 subunit OS=Pongo abelii OX=9601 GN=PSMF1 PE=2 SV=1
Q92530	Proteasome inhibitor PI31 subunit OS=Homo sapiens OX=9606 GN=PSMF1 PE=1 SV=2
Q3SX30	Proteasome inhibitor PI31 subunit OS=Bos taurus OX=9913 GN=PSMF1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008720 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11566 all species →	PI31_Prot_N	PI31 proteasome regulator N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045128 all species →	Family	Proteasome inhibitor PI31-like	Interproscan
IPR021625 all species →	Domain	PI31 proteasome regulator, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13266 all species →	PROTEASOME INHIBITOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004866 all species →	Molecular Function	endopeptidase inhibitor activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0070628 all species →	Molecular Function	proteasome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06700	PSMF1; proteasome inhibitor subunit 1 (PI31)	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033657-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

68.7Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.05	22.01
polyp at pH7 6	18	18	14.80	19.62
coral polyp · control treatment	16	16	23.35	68.71
coral polyp · oil and dispersant treatment	16	16	16.92	64.82
coral polyp · oil treatment	16	16	16.49	24.17
coral polyp · dispersant treatment	16	16	11.37	17.30
Polyp	10	10	15.92	22.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.45
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.37
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.