Gene detail

Detailed information of OS493_033687-T1 in Lophelia pertusa

Genomic Location: scaffold_272:53504...70578
NR annotation: KAJ7382631.1, hypothetical protein OS493_033687 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_033687-T1

ATGTTGGAGAGTTTAGCTGCATGGGTTCTAAGGACGTATGTCGGAGAATACGTGGAAAACCTCAACACTGACCAACTTTCCATTGGCTATGCTTTGAAAGGTCTTGAGCTTCCATTAGAGGTGAAATCAGGATTTATTGGCCATCTACAACTCTCAATACCCTTGCGTCGACCAAAGTCTGAGCCATGGATTGTACATATTAACAAGCTTTATCTTGTTGCTGGGCCACTGAAACATTCAGAGTATGATGAGGAAGAAGAAAAAGATCGGGAAAGGACACGTAAAAAGAAGCGCCTGGATGCTCTGGAGGCTCAGTGGCTTGCAACTAGAAATGAAAATAATGGAGGCTTCTGGTCTGGTTCTTGGTGGCCGTCCCTGTATTCATCTTTCTCTACAACAATAGTTGAAAATTTACAGCTTGTCATTAGCGATGTACACTTTCGCTATGAAGATGCGACAACTAAAGAGTCCTTGCCTTTTGCATTTGGCATTACTATTGGTAAACTCTCAGCTCAGTCTACCAACGAAAACTGGAATCTAGAAGAGGTCATTCAGAATGAACGAACAATCAAATACAAGTTAATTGAGCTACAGAACATGGCAATCTATTGGGACACTGATGTGACTCTTGTAGGCGACTTGCCATCCAGAGATCTTGAGAGTGCACTTCAACGGATGATTAACAGAAACCAGGGAAAAGTTGGCTTCAGTAAGCATCAGTACATCTTGGAGCCTACTAGTGCACAGGCTAAGATGAAGCGCAATGCCAGTGCTTTGCCTCTGAGGTCTCGGCAAATGCCACGTTTTGTTGTGGATGTTCATGTGGAGAAGATTCCATTGTCACTGGAGGAAACACAGTACAATATGTTAATTATTCTGATGGATGACTTTGAAAGGCATTTCAGGCAACGTCATTACCTCAAATGGAGACCAAAATGTGATATCAAGAACAATGCAAGGCAATGGTGGCAGTTCTCAATAACATGTATTATGCAGTCAATTAAAGAGAGAAATATGCGTCAAACATGGAGTTTTGCTGTCAAACGAGCTCATGACATTGTGGAATATGTAAATATATATTCACAACATCTTACCTCTGCTACAGTGGAACCTTTGCTCAAGGAGGAACAGGAACAAATTGAGGATGAGTTAACATTTGAGGAGCTGGTAGTTTTAAGATCTATTGCACAAACAAGGGCAGAGAATGAATTGAGTCAGCGGATGCAGCCAGGTAGCGAGGATCAATCTCAACTGCTACAGAAGGAGGAACCAGGGCATCCTACCCCTGCCACAGTAGGAGGTGCTGGGAGTTGGCAAGGCTGGTTAACAGGGTGGTACAGTTGGTATGGAACTGACACTACTGATGGGACAGCTGGCATGACAAAAGGGAATGATACAACTCCAGTGTTTATAGGAGAACCTCCCACTACAAAGGAGGAAGAGGAGTTCCTTGGAGAGCTTGCTGATAGTCATCTCAACGAATCCATCTTCAACAGAGACCAGGTCTTTGCGCACTTGAACTTCAGACTGGATGCAGGCTCCTTTAAATTGGTCAATACCAAACACTCAAACACTGTCGCACAAACAACAACTGCGTTGCCAGTAGTTGAAGTGGAATTTTCAGATCTGAGATGGGACTCTGAGATGCGTCCTCGCTCAAGCACATGGGAGTTTAGTATGAGTCTTGGAGCTTTGTTTGTTCGAGATAAACTAACTACAGGAACATTGTTCCCTGCTTTGGTTTGTCCCCAAGGTCGAGAGTCACAGAAAGTCTCCCAAACCAAGAAACAACAGGCAACAGTGGAAAGAGGTACAGTTGGAGCAATGGCGATGTCTGCTGCAACTTTGGGACTTAATATTTTACAAGATATGAGTGAACCAGTATTTGCAATGAAGTTTGAATCTCTACCACCCGCAAGCAAAGTTGCTTACAGGTTATCAGTAACCACACAACCTCTGGATGTAGTTTACAACCCTCTGGTACTTGATCACGTCTCAGAGTTTTTTTCCCGTGCGTCAATGGAAGGTACTCAAGCCCTTCATATTGAGAGGCAGCTCCGTGAAGTGGCACGGGTCAGATATGAAGAACTCAAGAATCAGACGAGAGCTGAACTTGTCCAAACTCTTGATGCCATGATGGAAGGATCAGAAGTGGGCCAGTCAAAAAGATGGGATATTCAATTGGATATTTCTGCACCAAGATTTCTTGTTCCAGAGAGTTTCCAGGACAAGAAGGCTTCAGTGGTTTTGATAGACTTTGGGCATTTAAGTTTTGCAAACACCCAAGCCCTGAACAGAAAGAAGACAATTTCAGAAGGTCAAGACTCTAAAACAGAAATGGAAGATGACTCTTTTGTGACTCCACCCAGCACCCCACCCGTAGAGGAAGAGGAGGAGTTTATGTCAATCACCGATCACCGATTCAACAGATGCACTTGTGAATGA

Transcript

OS493_033687-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5THJ4	Intermembrane lipid transfer protein VPS13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2
Q9VU08	Intermembrane lipid transfer protein Vps13D OS=Drosophila melanogaster OX=7227 GN=Vps13D PE=1 SV=3
Q55FG3	Intermembrane lipid transfer protein tipC OS=Dictyostelium discoideum OX=44689 GN=tipC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16908 all species →	VPS13_ext_chorein	Vacuolar sorting-associated protein 13, extended-chorein	Repeat	Interproscan
PF16910 all species →	VPS13_mid_rpt	VPS13, central RBG modules	Repeat	Interproscan
PF12624 all species →	Chorein_N	VPS13-like, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031646 all species →	Domain	Vacuolar protein sorting-associated protein 13, extended chorein	Interproscan
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR031642 all species →	Domain	VPS13, middle RBG modules	Interproscan
IPR026854 all species →	Domain	Vacuolar protein sorting-associated protein 13-like, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033687-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_033687-T1 global co-expression network