Gene detail

Detailed information of OS493_033724-T1 in Lophelia pertusa

Genomic Location: scaffold_272:450613...452723
NR annotation: KAJ7382667.1, Endothelin-converting enzyme 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DPE0	EEF1A lysine methyltransferase 4 OS=Mus musculus OX=10090 GN=Eef1akmt4 PE=2 SV=1
P0DPD7	EEF1A lysine methyltransferase 4 OS=Homo sapiens OX=9606 GN=EEF1AKMT4 PE=1 SV=1
P0DPE1	EEF1A lysine methyltransferase 4 OS=Bos taurus OX=9913 GN=EEF1AKMT4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010088 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13649 all species →	Methyltransf_25	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051419 all species →	Family	Lysine/N-terminal Methyltransferase Superfamily	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR041698 all species →	Domain	Methyltransferase domain 25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12176 all species →	SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_033724-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22857	EEF1AKMT4; EEF1A lysine methyltransferase 4	EC:2.1.1.-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033724-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

14.0Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.92	6.19
polyp at pH7 6	18	14	3.30	7.20
coral polyp · control treatment	16	16	4.54	9.24
coral polyp · oil and dispersant treatment	16	16	3.74	14.03
coral polyp · oil treatment	16	16	4.25	6.80
coral polyp · dispersant treatment	16	14	1.71	4.82
Polyp	10	8	2.92	5.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.