Gene detail

Detailed information of OS493_033754-T1 in Lophelia pertusa

Genomic Location: scaffold_273:252271...258813
NR annotation: KAJ7376593.1, Golgi membrane exchange factor (Ric1p-Rgp1p) subunit [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BHT7	RAB6A-GEF complex partner protein 2 OS=Mus musculus OX=10090 GN=Rgp1 PE=2 SV=1
Q92546	RAB6A-GEF complex partner protein 2 OS=Homo sapiens OX=9606 GN=RGP1 PE=1 SV=1
Q2T9P3	RAB6A-GEF complex partner protein 2 OS=Bos taurus OX=9913 GN=RGP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007655 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08737 all species →	Rgp1	Rgp1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014848 all species →	Family	Reduced growth phenotype protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12507 all species →	REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0034066 all species →	Cellular Component	Ric1-Rgp1 guanyl-nucleotide exchange factor complex	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20477	RGP1; RAB6A-GEF complex partner protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_033754-T1 global co-expression network