Gene detail

Detailed information of OS493_033809-T1 in Lophelia pertusa

Genomic Location: scaffold_274:249880...250506
NR annotation: KAJ7370184.1, Testis-expressed sequence 10 protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RDK1	Testis-expressed protein 10 OS=Pongo abelii OX=9601 GN=TEX10 PE=2 SV=1
Q3URQ0	Testis-expressed protein 10 OS=Mus musculus OX=10090 GN=Tex10 PE=1 SV=1
Q9NXF1	Testis-expressed protein 10 OS=Homo sapiens OX=9606 GN=TEX10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004262 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12333 all species →	Ipi1_N	Rix1 complex component involved in 60S ribosome maturation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024679 all species →	Domain	Pre-rRNA-processing protein Ipi1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16056 all species →	REGULATOR OF MICROTUBULE DYNAMICS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0071339 all species →	Cellular Component	MLL1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033809-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033809-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

10.4Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.63	5.37
polyp at pH7 6	18	16	3.70	10.42
coral polyp · control treatment	16	16	3.65	7.99
coral polyp · oil and dispersant treatment	16	16	2.95	9.56
coral polyp · oil treatment	16	16	3.20	5.86
coral polyp · dispersant treatment	16	15	2.90	9.40
Polyp	10	10	2.78	5.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.