Gene detail

Detailed information of OS493_033868-T1 in Lophelia pertusa

Genomic Location: scaffold_276:52416...59654
NR annotation: KAJ7321760.1, hypothetical protein OS493_033868 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92734	Protein TFG OS=Homo sapiens OX=9606 GN=TFG PE=1 SV=2
Q9U1W1	Protein tfg-1 OS=Caenorhabditis elegans OX=6239 GN=tfg-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006355 (this species only)
Ubiquitin family	ULD\|UFD\|PB1 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00564 all species →	PB1	PB1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034857 all species →	Domain	TFG, PB1 domain	Interproscan
IPR000270 all species →	Domain	PB1 domain	Interproscan
IPR033512 all species →	Family	Protein TFG	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15335 all species →	PROTEIN TFG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0048208 all species →	Biological Process	COPII vesicle coating	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09292	TFG; protein TFG	-	Thyroid cancer	ko05216	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033868-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

158.0Max TPM

45.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.48	52.35
polyp at pH7 6	18	18	36.01	62.78
coral polyp · control treatment	16	16	40.57	73.74
coral polyp · oil and dispersant treatment	16	16	66.05	89.97
coral polyp · oil treatment	16	16	35.44	49.00
coral polyp · dispersant treatment	16	16	80.55	158.03
Polyp	10	10	18.87	31.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.35
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.44
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.06
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.95
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.95
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	158.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.