Gene detail

Detailed information of OS493_033871-T1 in Lophelia pertusa

Genomic Location: scaffold_276:75871...83428
NR annotation: KAJ7321763.1, hypothetical protein OS493_033871 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9X248	3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=fabG PE=3 SV=1
H9XP47	Meso-2,3-butanediol dehydrogenase OS=Serratia marcescens OX=615 GN=budC PE=1 SV=1
G5EGA6	Dehydrogenase/reductase SDR family member 4 OS=Caenorhabditis elegans OX=6239 GN=dhrs-4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001090 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43975 all species →	ZGC:101858	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033871-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033871-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

76.7Max TPM

28.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	33.18	59.65
polyp at pH7 6	18	18	35.80	49.82
coral polyp · control treatment	16	16	28.45	42.00
coral polyp · oil and dispersant treatment	16	16	20.72	33.89
coral polyp · oil treatment	16	16	26.29	46.46
coral polyp · dispersant treatment	16	16	19.39	38.62
Polyp	10	10	42.50	76.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.47
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.11
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.81
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	76.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	59.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	53.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	44.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	38.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	32.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.