Gene detail

Detailed information of OS493_033876-T1 in Lophelia pertusa

Genomic Location: scaffold_276:112524...158474
NR annotation: KAJ7321768.1, hypothetical protein OS493_033876 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_033876-T1

ATGGCATTGGATGAAGGCGCACCGCCTTTAAATAGCACCGCCTTATTACAAGTGCGTATACATTACAATGTTACGTTCAAATACAACGACACAAACCCTTTTACGTATGTCATTCGTGGTGCGTTTCAAGTTGAGCCGCCAGTCATGTTGAGCAGCGCCCATGCCAAGGCTAGCCTGGGCTTGTTCTCACAGATGTCGGGTGAATTTCAGGTTAAAACAGGAAATATTCAGCGCTTAGAGAAATTCGAGATTTTGAAAGAACCCGCGTTATACATCAAAGCAACACTCGTCAGCGATTGGCCAGATTACCAGGTTATACGGATCGCGTTGCAGGTATCTGACCGGGACTTCAATGTCAAGACCGCACCAACGAAAGTGCATTTTAAGCTTATCAACCTGGCTACAAACTCGGAGGTAAATATCAACTGTGTTCCATCGACTTACACCGGAATATGTGTTGGACGTTTGCACGTTCCACAGGAATGGCTGAACACTACCGTTTCTGCTCACAAAGCTTCTGTGCAATATGGTTTGTTTCCTTCAAATATGGTAGAAATAAAACAGATTGCTCTGAGTGGCAAACAAATCCCTCAAGTTGAAGGAAACTTTGTAATCTTGGCGCCTTTGTATTTATTGAATACTGGTGATGCGTTTTTACTTGAGGTCTATGCTCGGTATCCAAAACTTGTGAAGTATTACACTTTGATTTTTACACTTTCGTCTGGTTTGAAGATAAACGGCGTGCAGGCTTCTCCGTCGTGGAACGTCCAAACAACGTTCAATGGAGCGAACGAGTTCGTGGTGTTTGGAGTTAGAAAAAGTGACCACAATGATGATATACCAGCTTCTACCTCGCTGTATTTCACCATCAAAATTGAAATCGCTGAAAATGCCATAACGGTGAACCCAGAATCCATGGAATGCATTGCGAAACATGTCAGCGACCAAGAAGGCAATCCAATGATCGATACACCAGTCAAAGCTGTTTTCCAAGACAGATTCGGAAGAAATGAAATAGGACGTTTTGTCGTTGTTGAAGATGGCGTCACAACTCTTTTTGTTGTCGCTGATTACTCGGTCATTGTAAACACAGCTGTGCTGAATGGAAGGCGGATTGTTGTCCCTGTGGCAGTGCATGGCGTGACCGCGTTGGGGCGGACCTTGAACGTGACGGGCGTGACTTGTAGAAGTCTTGATGTTACTGTTTTGAAAGTTGCACATGACTGCTCTAGCGTTTATGTAAATGGAAGTGAAACTCGCGGATCAACTGAAGCAATAATTGAGTTTTCACACAAAAATCTTACAGCGAATTCTTCCTTCATTGTGTGGACACCGACAATTCCTATTTCCTTGAGTGTCACGCCAGCAAAGTTGAGGAGAATACGTGACTGGTACGATCCTAGTGATTCGTGTAAGTCACGCTATCAGCATGCACGCGTGACAGTAACGACGGAGTTTTCGAATGGCAAGGAATCATTCACTGCAGTCGATGTTACGCAGCACGTTAAAGATAACATTAAAAGCTCGAATATCAGCGTTGCTGAAATTGTTGGTTTAAATATTCATGGTAAAAGCGTTGGGAAGGCCACTATTGAAGTTTACAACTCTGAACTAGATCAAACACTCGGTGATGTGATTGTGGAAGTTATCAATGAGGACACAAGAGTGTATATTCTTAATGCAGTTATAGCAACACGGGTATTCGTTGTTCTACCAAAGTCACTAAACACCTCGCTACAGCATGCAGTCAACGTTAACATGGATCACAAGTTTTCTATCCCGGGAGACGAGGGCTCGGTTGTCGTATCTTTGCAGTATAGCGATGGAGTAGTGAATACGTTTGACAACCTGAACGGCTTCTACGTCAACTCTACAAACAACAGTGTTCTTACGGTGCAAGGGGAAAACATTACAGCGGTTAACGATGGAAGCGGGAATCTACTTCATGTCATCATGCACTCGGGTCACTGCACACAGAAACCAACCATCAGCTCACGCACAAACGTTGACGTCACTTTCCAGGAACCAGTTGCAGTGGTCCTTACTTTAAGCTCAAGACAAATAACCCCCCATGGGGACCCTGCCGAGGCGATTGGTGTACCCTTGTCCACAGAAATAACCGTGACTCTTGTTTACAATGTTAGTGGTCGCGAAGAACGCCTTGATGTTTCAAATGACAATCGGACAATTTATAACCTTGAAGTCGGCGGTGCTTTGGTAAATTTCGTTGAAACAGAGCGTGCAATTGTTGTCTCCGCTTCCGGTGCTGGCTTCGGTGAAGTTGAAGTGTCAATCAAGTTTACGCATGTTCAATCGAGTAGTAAAGTGGTCATTTATGTCATTGGCGCTCAAGAACTGTCCTGTTATGCAAGTCCACACCCAGCTTTTAACTCTTCGACGAATGTAAACGTTACTCGGTTGAATCCGATTGGAAACTCTGGAGAACATCAACAGGCGAGATTGAATCTGATTCTGCTTCTAACAAACGGAACAACAAGCGACATTTCAAGAGACGAAAGGGCACGGTTCGAGATCGCAGTGGCTCAACCAGCTGAGCTTGCTCAGAACAGCTTCATCAAAACCTCTAATGATGGGTATCGCGTGGTGTCGGTTCAGTGGAGAAATGAGAGGGGTCAGCTGTCAATTAATACTAGTTTTATGGGCGTGTCTAGTTACGTGGTAACCCTGCAGATCGAGTCAACTCCTATAACAGTGACATCTGTAGAGCTTGCCATGCCACCGAACTTCACTCTGAGTGGTTTGAGAGATCGTTCAACTTTGCAACTTACCGTGAATCTTGAATTTAGCGACAGTTCTAAACTTCTTGGGCTCTTTAGCTCAGAAAACACAACGTTGTTTGATTTAGTGACTTTCAGTACCCAGGATACAACAAAACTATCGCTGAACGAGTCCAGTGGCTTAGTCACCCTGAAAGCCAATTCCCCACAAGAAGTACGCGTTACTGTGTCTGCAGTACAATCTCCCTTGCTGAAAGACTCCTTTGCGTTCGCCTGCAACTTAGACCCGGATGTTGGTGACGTGGATATCGGTGACGTCACTGGTGTCGCGCTAAAGCCCGCGCATGTCGGAGATAGTTTTGTAGCCGCTGTGCGCATTAACTCTGGAAAGCTGGTGCTAGGAAGCTTCGATGTTGAAATCGTTTATGACACTGAGTTGTTGGAGGTTATCACTGTCAATGAAGGTACAGACATGATTGGTTTCTTTATCGCTGACAGATTGAGCCAAACCGGAAAAGTGAGAATCTCTGGAGCACTCAGTATCGAGAGCCAGGACCATCGCATCCGCCATGTTGCAGATGTCAAGTTTCGAGTCGTATCAAGCGGCATTGCCGGTGTTAGTGGAACTGTTATGATGATCGCTACTGACGATCTTGTTGGTAGCGTTATTGGGCTTCCTGTTCCTAGGAATTTTGTGGCGGGAGATATCGAGATTGCTACTGACAATACCTTGGGTCGCCAGCGGAGATCTCTTGTATCGAAATCAAAACTTCACTCGCAGTCCTCAAGTAACGCTCGTAAGAGGCGTTCTGTCGTTGCTTGTCCCAATCCCCCTTGCTCCACTTGTCCAAACGGGAAGAGAGAGCCTGGCGATACTGATGGCAACTGTATTTTCGACATAAGAGATGTAAAGTTCACGTTGGCTTACATGACGGAGCAGCAGTTCAACTTCAGCCGCGCCAAGGGACAACAGATACAGAATTATATCACGCAGCAGCAGCTACAGGCTTTGGATGCAAACGGGGACGGATCAGTGACCTTAAATGACGTTAATCTACTACTAAGAGCTAATCTGAAACTCGTTTCGTTGCTTCCTACTCTTACAGTCGTCCCAGTTGAAGATCCCAAGTCCCATTGTCTTCTCACCATTTCTGTGTCTTCCACCGAGCTTGGTGTTCAACCTTCTGATGCAAATCGTACAAATATTTTCTTCGATGTTTCGCACTCTGAACAAAATTTTTCCAACAGTTTGCGTGAGAGTATCTTTACAGCAGGGTCTATAGATACCACTGACAAAGGAATTCCCGGTGGAATTATCAATGCAGAATTTAACACTGCGAATAGAAGATTTGTGGCATCATTGAACACCTCGCTGCTCTATGCAAGCGTTGGTTTGTCGTTCGTTCAAGTTCGCTTTGCAAAGGATGGGTCGTTTGACTTCACAAGAACTGTCATGGTCAATGGATTATTCACCAGGCCTCCGCGTTATCCAGGCGTCCTTAACGCTACTCTCGACCTAGGCAATGGAAGACGCTACAGCATTATAAGACCAAACGGCTACAACCCTTACACTTTCTTCAGTAATGCTTTGGCGTCATCCAATTGCAGTGATGCTCCTCTCCTTGAAAGCGATCTTTTCTTGAAAGCTCTTGGCGCAAGGAAACTCTTGGCGTCCTGGAAGCTTGCAAATGTAAGACGAGGATTAAACTTTTCGTTCACTCTGAGCCTGCGGCTTTGTGATCCAGCGCAGCTAAACGAACCTTGTGAAATCCGTGCGTTGCGAGTGACTGGAACTAACCATACCGTGACGGGCCTCACACCGTACACCAACTACTCGGTTAAAGTAGAGACCACAGGGATACCACTGAGAGAGACACGCTGGGAGGCTATTCGCACATTCGAGTCAGTACCCGAGGGAGTTGATCCTCCTGCTTTGGAAGTCTCAAGCTCTTCTTCAATGAACGCCTCATGGACAGAACCTCGACAACCTAATGGCATCATCATTAGTTACTCATTGCACATGCGCAGTTTTTCCAGTTACTCCGTCCTTTACCAAGGCTCCGGCCTGTCGTATCACGTGACTGGACTATCCGCTGGTCAAGAGTACTTTTTCTACATCATGGCCAATACATCTGTTGGTGGCACAAAGAGTGCTGTTGTTGGTGCCTCTGTGCTTGCAGTAAAGATACCAGCTTCAGGAGCGCGCAAGACAGATCTGTCAATTGAGGTTATCGTAGGAATCACTATTGCAAGCGCCGCCTTCATTGCTCTGTTGATCATTCTTCTGGTGTGGCTCGTCAGGAAACGCATTGAGCGAGAACAGCCAAGTATGCTGGATTATCACTCGCTACACAAGTACAATTCTTTGGACGTCAATGATCGGGACAACGTATTAATGATGCAGCTAAGGTCGAGCTCAAGTCTGCGAGACACAAGTTCCGCGAGAGGACGAATGTATGAACATCATTTCAGTATGGATGGACTGGAAAATCCCTGGAAGGAGCAGGACTTAAAAGATGAATCTGGGCATGACGCGCTTACTATGGTGAACCACGGGAACTTTGAACCAGTCTCCGCGCGAACTCAGAACTGGGACCCAGGCTACGAGGAGACCGTTCTCAAAGAAGCAGCCCAAGAGATGAATGAGCTTGATGTAGCAATGAAAGAGAGCGTTGACAGCGAGGGGCGTATGAATGGCTTTAGTGGTCAGCTGCCTTCTCTTAGGGAAGATAACCTCGTTCACATGTCGAGGCTATCTCACAACCAATCCTCTTTGAGTCCAGAAAACACGAGTAAGAAGAAGTTCAAGAAAATGAAGGAAGGCAAACAACCTACCAGTGAGGGAGCCGTCGAGTGGGACTACTATTACGCCAGGAGCGCATTAGCGGATGATGGCGACTATGGACCTGGGGAACTTGCGGATACGAGGACACGTGGTCAGATACGAAAGGCGCGCCTGCTGTTAGAGGAGATGCTCCAGCGGTTATCAAGTGGAGACGTTAACAGAGAGTTCAGTGCCCTGAAAGCTGAGAGGACAGAAGGAACTTATCAATGTGCCAATAATCCAATTAATCTGCCTAAAAATCGCTACAAGAATATCCTTCCTTTTGATCATTCGCGAGTGAGCCTGGAGATAGAAGAAGGTCAAGAGGACGCCGATTACATCAATGCGAATTTCCTGGATGGATTTAAACAGAACAATTCTTACATCGCAACACAGGGCCCACTGAACAACACCATCGCTGACTTTTGGCAAATGGTTTGGGAGCAAAACGTTCACGTGATCGTTATGTTAACGAGACTGCAAGAGGGCAAGAAGGTCAAATGCGTCAAGTATTGGCCTGACACGGATGAAGAAGTGACATTTAGAGATTTTGTGATCACCAGCACTTACAAAAGAAAACTGGAGAGTCGTGTGGTCCGCCGTTTTCTTCTTGAACATTCTGGCAGCGGCGAGTGTCGAGAGCTCACTTACTTTCAGTTCACTGCTTGGCCTGACTTTGGTATCCCATCATCCCCTGCGGACTTCCTCGAGCTCTACTATGAAGTGATGCAAGAGTACAAATCACTTCCGGTTCCCGGGACCCCCATGTTGGTCCATTGCAGTGCGGGGGTCGGAAGGTCCGGGGCATTTTGCGCCATTAACAACTGCCTCCACTCGTTTAGATCCACGGGCAAGATAGACGTGGAAGAAGCCGTCCGGGGCTTGAGAAAGCAGCGTGCTGGAATGGTGCAAACGTTAGAACAATACGCGTTTTGTTACAAGAGCCTCGTTCTCGCTCTGTTGTACCAGATCAAGTTAAAGAAGCTGAAGGGAATTTCTCTGTTGAGCCAATCTGTGGCCTCGTCAAGTGGTGTGTGGACGTCCGCTGAAAGATCTTTAAGTCCTCTAGAAACTAGCTTCAGTCAATCACGACTTCAAAGCCCAGCTTCCGAAATAACTCAGGAGCCCGTGACGTCACAGACTGCGCCTCCATATTCATACAGTCAGCGGTTGCTCCCTCCAGTGGGAGCTTATGAAGACCCGCGTGCAAAACCCGATGGAGACGATCTGCCTATTGTGGTTGTCCATTCTACTCCAAAGAAATTTGTTTCAAAACAAGATTCCCTTCCTTTGGCATTGCACGAGAGCAAAGAGACCAAAGACGAGGGAAGTGATAGTACGGAAGCCCCCCTCGGGGATCACCGGAATTTGGACGTGCCCGTGGGAGAGACCGGTCGAAGGAAAACAACAGGAAATATTCGACGGCGTCCTGATCTTGGGGAACCCCCACCGCCACCTCCTCCTCCGCCCCCTCCCCCTCCCCCTCCGCCTCCCCCTCCCCCCTGTTCTTTTCCGTCCATAATGCCAGATGAGAATGGCTTCAGTGATGATGACTCACTGCCAGAACTTCCCGAAGTCGATTATCCTAATTTCGAGCTATCCGAGGACGATGATGAATCTTACCCTCCACCCCCAGTGGCACTTTGTCTCCCGGCTGACGCAGAGCAACCAAACCAGTTTGACTCCTCGGCCTAA

Transcript

OS493_033876-T1

Protein

OS493_033876-T1

MALDEGAPPLNSTALLQVRIHYNVTFKYNDTNPFTYVIRGAFQVEPPVMLSSAHAKASLGLFSQMSGEFQVKTGNIQRLEKFEILKEPALYIKATLVSDWPDYQVIRIALQVSDRDFNVKTAPTKVHFKLINLATNSEVNINCVPSTYTGICVGRLHVPQEWLNTTVSAHKASVQYGLFPSNMVEIKQIALSGKQIPQVEGNFVILAPLYLLNTGDAFLLEVYARYPKLVKYYTLIFTLSSGLKINGVQASPSWNVQTTFNGANEFVVFGVRKSDHNDDIPASTSLYFTIKIEIAENAITVNPESMECIAKHVSDQEGNPMIDTPVKAVFQDRFGRNEIGRFVVVEDGVTTLFVVADYSVIVNTAVLNGRRIVVPVAVHGVTALGRTLNVTGVTCRSLDVTVLKVAHDCSSVYVNGSETRGSTEAIIEFSHKNLTANSSFIVWTPTIPISLSVTPAKLRRIRDWYDPSDSCKSRYQHARVTVTTEFSNGKESFTAVDVTQHVKDNIKSSNISVAEIVGLNIHGKSVGKATIEVYNSELDQTLGDVIVEVINEDTRVYILNAVIATRVFVVLPKSLNTSLQHAVNVNMDHKFSIPGDEGSVVVSLQYSDGVVNTFDNLNGFYVNSTNNSVLTVQGENITAVNDGSGNLLHVIMHSGHCTQKPTISSRTNVDVTFQEPVAVVLTLSSRQITPHGDPAEAIGVPLSTEITVTLVYNVSGREERLDVSNDNRTIYNLEVGGALVNFVETERAIVVSASGAGFGEVEVSIKFTHVQSSSKVVIYVIGAQELSCYASPHPAFNSSTNVNVTRLNPIGNSGEHQQARLNLILLLTNGTTSDISRDERARFEIAVAQPAELAQNSFIKTSNDGYRVVSVQWRNERGQLSINTSFMGVSSYVVTLQIESTPITVTSVELAMPPNFTLSGLRDRSTLQLTVNLEFSDSSKLLGLFSSENTTLFDLVTFSTQDTTKLSLNESSGLVTLKANSPQEVRVTVSAVQSPLLKDSFAFACNLDPDVGDVDIGDVTGVALKPAHVGDSFVAAVRINSGKLVLGSFDVEIVYDTELLEVITVNEGTDMIGFFIADRLSQTGKVRISGALSIESQDHRIRHVADVKFRVVSSGIAGVSGTVMMIATDDLVGSVIGLPVPRNFVAGDIEIATDNTLGRQRRSLVSKSKLHSQSSSNARKRRSVVACPNPPCSTCPNGKREPGDTDGNCIFDIRDVKFTLAYMTEQQFNFSRAKGQQIQNYITQQQLQALDANGDGSVTLNDVNLLLRANLKLVSLLPTLTVVPVEDPKSHCLLTISVSSTELGVQPSDANRTNIFFDVSHSEQNFSNSLRESIFTAGSIDTTDKGIPGGIINAEFNTANRRFVASLNTSLLYASVGLSFVQVRFAKDGSFDFTRTVMVNGLFTRPPRYPGVLNATLDLGNGRRYSIIRPNGYNPYTFFSNALASSNCSDAPLLESDLFLKALGARKLLASWKLANVRRGLNFSFTLSLRLCDPAQLNEPCEIRALRVTGTNHTVTGLTPYTNYSVKVETTGIPLRETRWEAIRTFESVPEGVDPPALEVSSSSSMNASWTEPRQPNGIIISYSLHMRSFSSYSVLYQGSGLSYHVTGLSAGQEYFFYIMANTSVGGTKSAVVGASVLAVKIPASGARKTDLSIEVIVGITIASAAFIALLIILLVWLVRKRIEREQPSMLDYHSLHKYNSLDVNDRDNVLMMQLRSSSSLRDTSSARGRMYEHHFSMDGLENPWKEQDLKDESGHDALTMVNHGNFEPVSARTQNWDPGYEETVLKEAAQEMNELDVAMKESVDSEGRMNGFSGQLPSLREDNLVHMSRLSHNQSSLSPENTSKKKFKKMKEGKQPTSEGAVEWDYYYARSALADDGDYGPGELADTRTRGQIRKARLLLEEMLQRLSSGDVNREFSALKAERTEGTYQCANNPINLPKNRYKNILPFDHSRVSLEIEEGQEDADYINANFLDGFKQNNSYIATQGPLNNTIADFWQMVWEQNVHVIVMLTRLQEGKKVKCVKYWPDTDEEVTFRDFVITSTYKRKLESRVVRRFLLEHSGSGECRELTYFQFTAWPDFGIPSSPADFLELYYEVMQEYKSLPVPGTPMLVHCSAGVGRSGAFCAINNCLHSFRSTGKIDVEEAVRGLRKQRAGMVQTLEQYAFCYKSLVLALLYQIKLKKLKGISLLSQSVASSSGVWTSAERSLSPLETSFSQSRLQSPASEITQEPVTSQTAPPYSYSQRLLPPVGAYEDPRAKPDGDDLPIVVVHSTPKKFVSKQDSLPLALHESKETKDEGSDSTEAPLGDHRNLDVPVGETGRRKTTGNIRRRPDLGEPPPPPPPPPPPPPPPPPPPPCSFPSIMPDENGFSDDDSLPELPEVDYPNFELSEDDDESYPPPPVALCLPADAEQPNQFDSSA

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43378	Tyrosine-protein phosphatase non-receptor type 9 OS=Homo sapiens OX=9606 GN=PTPN9 PE=1 SV=1
O35239	Tyrosine-protein phosphatase non-receptor type 9 OS=Mus musculus OX=10090 GN=Ptpn9 PE=1 SV=2
Q641Z2	Tyrosine-protein phosphatase non-receptor type 9 OS=Rattus norvegicus OX=10116 GN=Ptpn9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011362 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF16070 all species →	TMEM132	Transmembrane protein family 132	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036439 all species →	Homologous_superfamily	Dockerin domain superfamily	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR050713 all species →	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR031437 all species →	Domain	Transmembrane protein family 132, middle domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000272 all species →	Biological Process	polysaccharide catabolic process	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033876-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033876-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

14.0Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.37	11.00
polyp at pH7 6	18	18	5.00	8.01
coral polyp · control treatment	16	16	6.23	13.97
coral polyp · oil and dispersant treatment	16	16	3.01	5.97
coral polyp · oil treatment	16	16	5.22	8.30
coral polyp · dispersant treatment	16	16	4.03	7.54
Polyp	10	10	3.44	6.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.97
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.