Gene detail

Detailed information of OS493_033892-T1 in Lophelia pertusa

Genomic Location: scaffold_276:315788...322885
NR annotation: KAJ7321784.1, hypothetical protein OS493_033892 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZTR5	Cilia- and flagella-associated protein 47 OS=Homo sapiens OX=9606 GN=CFAP47 PE=1 SV=5
A0A0G2JEB6	Cilia and flagella-associated protein 47 OS=Mus musculus OX=10090 GN=Cfap47 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002529 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_033892-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45912 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033892-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033892-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

69.7Max TPM

17.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.77	24.83
polyp at pH7 6	18	18	17.44	24.20
coral polyp · control treatment	16	16	21.79	69.70
coral polyp · oil and dispersant treatment	16	16	14.48	51.36
coral polyp · oil treatment	16	16	19.80	27.65
coral polyp · dispersant treatment	16	16	12.95	25.25
Polyp	10	10	17.18	27.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.52
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.39
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.06
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.12
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.83
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.24
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	27.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.