Detailed information of OS493_033900-T1 in Lophelia pertusa

Genomic Location: scaffold_276:471354...477150
NR annotation: KAJ7321791.1, hypothetical protein OS493_033900 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q29465Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=YARS1 PE=2 SV=4
Q12904Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens OX=9606 GN=AIMP1 PE=1 SV=2
O54873Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus OX=10029 GN=AIMP1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001647 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01588
all species →		tRNA_bindPutative tRNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051270
all species →		FamilyTyrosine-tRNA ligase and regulatory proteinInterproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR002547
all species →		DomaintRNA-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11586
all species →		TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004831
all species →		Molecular Functiontyrosine-tRNA ligase activityInterproscan
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_033900-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_033900-T1 global co-expression network
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