Gene detail

Detailed information of OS493_033935-T1 in Lophelia pertusa

Genomic Location: scaffold_277:461497...462396
NR annotation: KAJ7389073.1, Pecanex-like protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98UF7	Pecanex-like protein 1 OS=Takifugu rubripes OX=31033 GN=pcnx1 PE=3 SV=1
Q9QYC1	Pecanex-like protein 1 OS=Mus musculus OX=10090 GN=Pcnx1 PE=1 SV=3
E9PSU6	Pecanex-like protein 1 OS=Rattus norvegicus OX=10116 GN=Pcnx1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002658 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05041 all species →	Pecanex_C	Pecanex protein (C-terminus)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007735 all species →	Domain	Pecanex, C-terminal	Interproscan
IPR039797 all species →	Family	Protein Pecanex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12372 all species →	PECANEX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033935-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033935-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

55.2Max TPM

25.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.56	34.44
polyp at pH7 6	18	18	17.90	26.75
coral polyp · control treatment	16	16	34.74	55.24
coral polyp · oil and dispersant treatment	16	16	30.51	46.05
coral polyp · oil treatment	16	16	32.98	46.27
coral polyp · dispersant treatment	16	16	22.89	36.83
Polyp	10	10	17.27	24.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.49
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.50
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.40
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.11
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.45
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.03
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.99
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.