Gene detail

Detailed information of OS493_033949-T1 in Lophelia pertusa

Genomic Location: scaffold_278:81678...117379
NR annotation: KAJ7382592.1, Nucleolar protein 11 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_033949-T1

ATGGCGGATCTCCGTGAACCTTTTGAGCTTTGTAAAGTTTTGCAAAACAGCTCACTGATTGGAATATCAAAACATACTGGTAGCGATAATGTTCTACTTACGTTTAGCGATAGAGGAGTCCTTGTCTATAACCTTCAACATCAGAAGCTTATCAACAGCTGGTCCGTGGAGCAAAGAGATGAAGTAACAAGTGCTGCCGTTCATAATCCGATCGATAACAATTTCTTAATGGCTGTAAACAAGACGGAAATGTTTATGTGGAAAGAAACTGATCCTGATTTTAAATCATGCCAACGAATCCAATCTGACAAGAATATCTTCAGTCTCCATGTGTGGAGCAACCAGCAAAGTGATCCACTTGTTGTGTTTGAAGATGGTTCTTCAATGTTTTTGGCAGATTTCCTTAGCACCAGTGAGAGCAGGAAAGTAAAAAGAAGGAGATCCACAAGGTCTTCACATGATTTCAGTCTTGTTTGGAGCTGTGTTTTCCATTATCAGAAGCAGCCATATTCTGGGACAATAAGGATGCATGTACCGGAAAAGAACAAGTACACTTTGAATGTTACAAATCATGGCACATCAGATCATGTTAACCCAAAGAGCAAGACAATGGAGTTTGAATTAACTCCTCCTACAGAGGATGCTGAGTTATTGTGCTGCTGTGTAAATGAGGAAGGACATCAAATTACATCTTACTGGTCCAATGGAGCTCTTTGCATCACAGAGCTTGAGACAGCACTACAGCTGGGCACAAATGAAAACATGTTAGCACTGTCCTGCAGAACAATTCATAGACTGCAGCCTCTGCACTCTGAAGGAAACAAAGACAAGGGATCTGTTGCTTTGACAGCCATATACACTGACCATGTTTGTCTCTGTGGAAGCAGCGAGATTGATGGAAAATTAAAAGATGTAATCATGGTGTGGAATATTAAATATGGCACATTGCAGTCCTGGCAGACTCTGGACAAAATAACAGAAAAACAGAGCTCAATACTCAGTCATGTGCGGAGTAATGGAGCTTGTTGTGTGTGTTGTATTCCTGGCTTCATTTGTGTTGGTTTTCGCCGCTGTGTGGCTGCATGTCAGTTCTCGATTGACACATGCTCGTTAGCATCTGCTCTTGGACAGTTAGATTCCACTGCAAAGTTTCTAAGAGATGACAGTTTTACACCAGAGCTACTTGTTACACCAAAGCTTGCAAGACCAGGCGAGGCTCTTCAGGGCTGGTCAGAGTTAATTGTAAAGGAGGATCAAGTAGAAAAAGAAGTGCTACAAAAGTTAACAGATCCATCTAAGACTCCAACGCTTGATAAATTTGCTACAGAACTGAAAAAGTACATGACATTAAAGCTGTCCAAACAAGATGACAAAGCTAAATCTGGCAAAGCAGGAACTGTGCCATTTCATGGCAAGTTTGGTAAGAAGACAGAAGTGTTATCTCAGCATTTTATTACCAGTGTCCTCTCCAGATGCACCAACGAGAAAAAGTTTTGGGCGAGAAAATCTGTATCTGAACTTGTTAAAACCAAGTGTGTTCCATCCAGTTGCAGTAAAGAACTGCTGGATTGTGTTGTGGAAAAGAATGACTTGGAGCTGCTTAAAGAGTGCATCAAGAATATCAAGGGCATTTCTGAAGATACTGTGGTTCTTTGTGTACGCCACATTTTAAGACTGGATGATGCAACACTTCCCAAGGGATCAAAAAAAAGTGTTACAGAAGAGTTACAACTGGATGACGACTTTAGCCAGATGCCTTTGGACAAGACGAGAGCCAAGTACTTATGCTCAGTATTGAGTTACCCTGTGAATGATATTTTCCTTCAGGCCAGTTTAAAGAAGCTTTCCTTTGAAGATGTCATACTGTTGTTGAAGTTCCTTATGTATCTCATGCACCGTGGTCTGACAGGCTTTGACGATGAAGTGGATTGTAGCACGCTGAAATTCCCACAGGTGTTGGACTGGACAGGATTGGTGTTAAACGCTCATTACACTCAATGGTGCTCATGCCTGAAGCCCACGAATTACTGGTCAGCTGTCACAAACTTGTGGCTCAACAGGTCCGCACTTGCGATAAACTACGTACTTTGGAAAGTTTCCTGGAGCATTTTAAGAAAGGAAAGCCTTTACCCAAAACAGAGGAAGTTGGACCTTACAGCATAG

Transcript

OS493_033949-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004889 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20998 all species →	Nol11_C	Nucleolar protein 11 C-terminal domain	Repeat	Interproscan
PF08168 all species →	NUC205	Nucleolar protein 11 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048897 all species →	Domain	Nucleolar protein 11, C-terminal domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR042859 all species →	Family	Nucleolar protein 11	Interproscan
IPR012584 all species →	Domain	Nucleolar protein 11, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15633 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033949-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_033949-T1 global co-expression network