Gene detail

Detailed information of OS493_033951-T1 in Lophelia pertusa

Genomic Location: scaffold_278:183162...197115
NR annotation: KAJ7382594.1, FAD-dependent oxidoreductase domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWF2	FAD-dependent oxidoreductase domain-containing protein 2 OS=Homo sapiens OX=9606 GN=FOXRED2 PE=1 SV=1
Q3USW5	FAD-dependent oxidoreductase domain-containing protein 2 OS=Mus musculus OX=10090 GN=Foxred2 PE=2 SV=1
B0UXS1	FAD-dependent oxidoreductase domain-containing protein 2 OS=Danio rerio OX=7955 GN=foxred2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002526 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13738 all species →	Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050982 all species →	Family	Auxin biosynthesis and cation transport	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43539 all species →	FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033951-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033951-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

66.2Max TPM

25.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.08	29.33
polyp at pH7 6	18	18	18.54	30.46
coral polyp · control treatment	16	16	34.89	43.04
coral polyp · oil and dispersant treatment	16	16	29.68	66.21
coral polyp · oil treatment	16	16	26.78	43.48
coral polyp · dispersant treatment	16	16	33.33	54.61
Polyp	10	10	14.81	28.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.91
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.23
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.11

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.