Gene detail

Detailed information of OS493_033955-T1 in Lophelia pertusa

Genomic Location: scaffold_278:256763...261547
NR annotation: KAJ7382598.1, hypothetical protein OS493_033955, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000878 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24141 all species →	2-5A-DEPENDENT RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033955-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033955-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

33.2Max TPM

11.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.30	27.56
polyp at pH7 6	18	16	12.47	27.32
coral polyp · control treatment	16	16	11.72	20.34
coral polyp · oil and dispersant treatment	16	16	9.41	14.86
coral polyp · oil treatment	16	16	10.81	20.05
coral polyp · dispersant treatment	16	16	8.29	13.53
Polyp	10	9	12.13	33.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.19
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.04
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	33.19
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	27.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.