Gene detail

Detailed information of OS493_033966-T1 in Lophelia pertusa

Genomic Location: scaffold_278:318705...320761
NR annotation: KAJ7382608.1, Golgi apparatus membrane protein TVP23 B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6NH52	Golgi apparatus membrane protein TVP23 homolog A OS=Homo sapiens OX=9606 GN=TVP23A PE=1 SV=3
Q9NYZ1	Golgi apparatus membrane protein TVP23 homolog B OS=Homo sapiens OX=9606 GN=TVP23B PE=1 SV=2
Q8IQC1	Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS=Drosophila melanogaster OX=7227 GN=CG5021 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006324 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05832 all species →	DUF846	Eukaryotic protein of unknown function (DUF846)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008564 all species →	Family	Golgi apparatus membrane protein TVP23-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13019 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033966-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033966-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

35.7Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	6.80	14.55
polyp at pH7 6	18	16	8.27	15.18
coral polyp · control treatment	16	16	13.85	35.66
coral polyp · oil and dispersant treatment	16	15	8.18	13.96
coral polyp · oil treatment	16	15	11.66	18.74
coral polyp · dispersant treatment	16	16	8.44	16.34
Polyp	10	9	7.97	14.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.71
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.