Gene detail

Detailed information of OS493_033970-T1 in Lophelia pertusa

Genomic Location: scaffold_278:349429...353745
NR annotation: KAJ7382612.1, hypothetical protein OS493_033970 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSH8	Transmembrane protein 94 OS=Mus musculus OX=10090 GN=Tmem94 PE=1 SV=1
Q12767	Transmembrane protein 94 OS=Homo sapiens OX=9606 GN=TMEM94 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002870 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_033970-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039720 all species →	Family	Transmembrane protein 94	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13219 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_033970-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033970-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033970-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

19.5Max TPM

6.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	6.08	17.25
polyp at pH7 6	18	14	5.78	16.95
coral polyp · control treatment	16	16	7.85	19.48
coral polyp · oil and dispersant treatment	16	16	4.85	10.76
coral polyp · oil treatment	16	15	7.54	18.00
coral polyp · dispersant treatment	16	15	4.63	13.00
Polyp	10	8	4.33	12.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.08
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.