Gene detail

Detailed information of OS493_033980-T1 in Lophelia pertusa

Genomic Location: scaffold_278:433918...439141
NR annotation: KAJ7382622.1, Glycerophosphocholine phosphodiesterase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T0T0	Glycerophosphodiester phosphodiesterase 1 OS=Bos taurus OX=9913 GN=GDE1 PE=2 SV=1
Q9JL56	Glycerophosphodiester phosphodiesterase 1 OS=Mus musculus OX=10090 GN=Gde1 PE=1 SV=1
Q9JL55	Glycerophosphodiester phosphodiesterase 1 OS=Rattus norvegicus OX=10116 GN=Gde1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002359 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03009 all species →	GDPD	Glycerophosphoryl diester phosphodiesterase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030395 all species →	Domain	Glycerophosphodiester phosphodiesterase domain	Interproscan
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46320 all species →	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006580 all species →	Biological Process	ethanolamine metabolic process	Interproscan
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0008889 all species →	Molecular Function	glycerophosphodiester phosphodiesterase activity	Interproscan
GO:0070291 all species →	Biological Process	N-acylethanolamine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033980-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033980-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

72.5Max TPM

26.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.67	34.77
polyp at pH7 6	18	18	19.36	28.07
coral polyp · control treatment	16	16	37.69	72.52
coral polyp · oil and dispersant treatment	16	16	34.17	62.78
coral polyp · oil treatment	16	16	32.81	54.48
coral polyp · dispersant treatment	16	16	17.88	29.97
Polyp	10	10	18.89	32.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.42
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.55
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.88
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.90
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	32.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.22

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.