Gene detail

Detailed information of OS493_033988-T1 in Lophelia pertusa

Genomic Location: scaffold_279:14093...17082
NR annotation: KAJ7376532.1, F-box only protein 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68FS3	F-box only protein 7 OS=Rattus norvegicus OX=10116 GN=Fbxo7 PE=2 SV=1
Q9Y3I1	F-box only protein 7 OS=Homo sapiens OX=9606 GN=FBXO7 PE=1 SV=1
Q3U7U3	F-box only protein 7 OS=Mus musculus OX=10090 GN=Fbxo7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007490 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11566 all species →	PI31_Prot_N	PI31 proteasome regulator N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047118 all species →	Family	F-box only protein 7	Interproscan
IPR021625 all species →	Domain	PI31 proteasome regulator, N-terminal	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15537 all species →	F-BOX ONLY PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:1903204 all species →	Biological Process	obsolete negative regulation of oxidative stress-induced neuron death	Interproscan
GO:1903599 all species →	Biological Process	positive regulation of autophagy of mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033988-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033988-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

87.8Max TPM

14.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.05	21.18
polyp at pH7 6	18	18	17.09	25.30
coral polyp · control treatment	16	16	20.96	87.77
coral polyp · oil and dispersant treatment	16	16	14.88	52.17
coral polyp · oil treatment	16	16	16.46	23.62
coral polyp · dispersant treatment	16	16	8.60	17.71
Polyp	10	9	8.98	18.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.21
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.