Gene detail

Detailed information of OS493_033989-T1 in Lophelia pertusa

Genomic Location: scaffold_279:17816...22433
NR annotation: KAJ7376533.1, F-box only protein 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y3I1	F-box only protein 7 OS=Homo sapiens OX=9606 GN=FBXO7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007490 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR047118 all species →	Family	F-box only protein 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15537 all species →	F-BOX ONLY PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:1903204 all species →	Biological Process	obsolete negative regulation of oxidative stress-induced neuron death	Interproscan
GO:1903599 all species →	Biological Process	positive regulation of autophagy of mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_033989-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_033989-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

105.7Max TPM

26.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.92	42.76
polyp at pH7 6	18	18	34.71	47.03
coral polyp · control treatment	16	16	31.01	105.70
coral polyp · oil and dispersant treatment	16	16	23.85	90.78
coral polyp · oil treatment	16	16	27.30	40.05
coral polyp · dispersant treatment	16	16	11.24	21.96
Polyp	10	9	20.89	39.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.45
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.82
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	27.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.38
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	24.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.