Gene detail

Detailed information of OS493_034024-T1 in Lophelia pertusa

Genomic Location: scaffold_279:474124...478084
NR annotation: KAJ7376568.1, ADP-ribosylation factor-like protein 8B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NZW8	ADP-ribosylation factor-like protein 8B-A OS=Danio rerio OX=7955 GN=arl8ba PE=2 SV=1
Q9NVJ2	ADP-ribosylation factor-like protein 8B OS=Homo sapiens OX=9606 GN=ARL8B PE=1 SV=1
Q9CQW2	ADP-ribosylation factor-like protein 8B OS=Mus musculus OX=10090 GN=Arl8b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025 all species →	Arf	ADP-ribosylation factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006689 all species →	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044154 all species →	Family	ADP-ribosylation factor-like protein 8A/8B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45732 all species →	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0008089 all species →	Biological Process	anterograde axonal transport	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07955	ARL8; ADP-ribosylation factor-like protein 8	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034024-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

88.7Max TPM

46.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.10	62.95
polyp at pH7 6	18	18	39.40	54.89
coral polyp · control treatment	16	16	60.86	87.42
coral polyp · oil and dispersant treatment	16	16	61.34	88.75
coral polyp · oil treatment	16	16	50.76	76.57
coral polyp · dispersant treatment	16	16	42.46	70.76
Polyp	10	10	26.48	52.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.30
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.89
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	52.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	32.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.