Gene detail

Detailed information of OS493_034031-T1 in Lophelia pertusa

Genomic Location: scaffold_279:496548...501869
NR annotation: KAJ7376574.1, hypothetical protein OS493_034031 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4L1J4	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Magi1 PE=1 SV=1
Q6RHR9	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 OS=Mus musculus OX=10090 GN=Magi1 PE=1 SV=1
Q96QZ7	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MAGI1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003778 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10316 all species →	MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034031-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034031-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

63.2Max TPM

16.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.63	16.50
polyp at pH7 6	18	18	8.38	12.60
coral polyp · control treatment	16	16	20.24	40.53
coral polyp · oil and dispersant treatment	16	16	24.20	37.88
coral polyp · oil treatment	16	16	16.61	27.28
coral polyp · dispersant treatment	16	16	28.87	63.21
Polyp	10	10	4.21	8.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.75
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.46
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.60
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.