Gene detail

Detailed information of OS493_034037-T1 in Lophelia pertusa

Genomic Location: scaffold_280:46232...49742
NR annotation: KAJ7370108.1, hypothetical protein OS493_034037, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000694 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00083 all species →	Sugar_tr	Sugar (and other) transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050930 all species →	Family	Major Facilitator Superfamily Vesicular Transporter	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR005828 all species →	Family	Major facilitator, sugar transporter-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23506 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034037-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034037-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

25.3Max TPM

6.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	7.74	25.32
polyp at pH7 6	18	13	6.68	18.00
coral polyp · control treatment	16	16	5.76	14.14
coral polyp · oil and dispersant treatment	16	15	4.45	9.63
coral polyp · oil treatment	16	16	7.22	15.59
coral polyp · dispersant treatment	16	15	4.09	13.95
Polyp	10	10	7.59	14.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.32
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.