Gene detail

Detailed information of OS493_034054-T1 in Lophelia pertusa

Genomic Location: scaffold_280:248948...251537
NR annotation: KAJ7370125.1, hypothetical protein OS493_034054 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF21633 all species →	MOV-10_Ig-like	Helicase MOV-10, Ig-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR049077 all species →	Domain	Helicase MOV-10, Ig-like domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_034054-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_034054-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_034054-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_034054-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

39.7Max TPM

9.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	8.37	20.11
polyp at pH7 6	18	12	3.32	9.64
coral polyp · control treatment	16	16	15.28	39.74
coral polyp · oil and dispersant treatment	16	16	10.84	24.25
coral polyp · oil treatment	16	16	10.45	21.63
coral polyp · dispersant treatment	16	15	15.81	35.24
Polyp	10	9	3.38	9.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.47
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.